Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00827 ATGGTGAGAGGGAAGACCCAGATGAGGTTAATTGAAAACGCAACAAGCAGGCAAGTCACCTTCTCCAAGAGGCGAAATGGGTTGATGAAAAAAGCCTTTGAGCTCTCAGTTCTCTGTGATGCCGAGGTTGCTCTTATCATCTTCTCTCCTAGAGGAAAGCTTTATGAATTTGCAAACTCAAGCATGCAGGCAACTCTAGAGCGGTATAGAAAGCATGCAAAAACCAAAGAAGCCCTCGACCCTCCATCGGTTAATGATATCCAGTTGGAGCATCTGAATCATGAAGAAGCAGCCACCCTGATGAAGAAAATAGAGCAGCTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGTTCTTGTTCCATTGATGAACTTCAGCAGGTTGAACTTCAGTTGGAGAAAAGTGTTTGCAAAATTAGAGCCAGAAAGGTTGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCACAAGTGGGAAAGTGAGGCAGAAGGAGGAGTAAAGGAAGTAGAAAGAGGGGAGAATTTAATGAACTATGCAGAAAGTAGCAGTCCAAGTTCAGAGGTAGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCAAGAACATTTCTCTCCCTTAACTGA 633 42.97 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATLERYRKHAKTKEALDPPSVNDIQLEHLNHEEAATLMKKIEQLEVSKRKMLGEDLGSCSIDELQQVELQLEKSVCKIRARKVEVFEEQIKQLKHKWESEAEGGVKEVERGENLMNYAESSSPSSEVETELFIGPPETRPRTFLSLN 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5522695 5528418 - Carg11097-RA Car08g00827 153401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00827 210 ProSiteProfiles K-box domain profile. 90 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00827 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g00827 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Car08g00827 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car08g00827 210 Pfam K-box region 94 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00953 Car08g00827 CCT
Car06g00953 Car08g00827 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01254 Car-Chr2:8458346 Car08g00827 Car-Chr8:5522695 5.22E-62 dispersed
Car08g00827 Car-Chr8:5522695 Car15g01075 Car-Chr15:8437266 2.46E-68 dispersed
Car08g00827 Car-Chr8:5522695 Car06g00953 Car-Chr6:7342139 2.81E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3993 PF01486 K-box 1.30E-20 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00827 - - bhj:120069607 332.028