Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00835 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAAGTGGCGGCGGAGGAGGAGGAGTAGGGGGAGGAGTAGGTCTGGGGAGTGGGAGTGGCGGCGGGGGAGGGCCATGTGGGGCCTGCAAGTTTCTTCGAAGAAAGTGCGTTCCAGGGTGCATATTTGCCCCATATTTCGACTCGGAACAAGGCGCCGCCCATTTCGCTGCTGTCCACAAGGTGTTCGGAGCCAGCAATGTGTCCAAGCTCCTCCTCCATATCCCTATCCATAAGCGCCCCGACGCCGTGGTCACAATTTGCTACGAGGCCCAGGCTCGCCTCCGAGACCCTGTCTATGGCTGTGTCTCTCACATCTTTGCCCTTCAACAACAGGTGGTGAGTTTGCAAGCCGAGCTGTCGTACCTCCAAGCCCAACTAGCATCACTGGAACTGCCGTCGCCACCAAACCCGCCACCTCCACCTCCACCACCAAGTTTCCAAGGGGTACCGCCGCTTTCCATCTCAGACCTGCCATCCCCCCCCTCCCTGCCAGCCACTTACGACCTGTCGTCCCTCTTTGACCCAATGGCTCAGCCTGCCTGGGTCTTGCCACAGCAGCGCCTCGACCCTCGCCAGTTCACCGGGGGTGGAGGCGGCAGTGGCGGTAGCAGCGGCTTGTCCACTGTGGCCGGAGAAGGCGATCTTCAAGCCTTGGCCCGTGAACTCCTGCATAGACACGGCGCTCCACCAAGCTCCGACTCCTCATCGCCGCCGTCAGTCTCTAAATAA 759 61.0 MSANPSTSGGGSGGGGGGVGGGVGLGSGSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPIHKRPDAVVTICYEAQARLRDPVYGCVSHIFALQQQVVSLQAELSYLQAQLASLELPSPPNPPPPPPPPSFQGVPPLSISDLPSPPSLPATYDLSSLFDPMAQPAWVLPQQRLDPRQFTGGGGGSGGSSGLSTVAGEGDLQALARELLHRHGAPPSSDSSSPPSVSK 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5589206 5591328 - Carg11089-RA Car08g00835 153409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00835 252 MobiDBLite consensus disorder prediction 141 168 - -
Car08g00835 252 MobiDBLite consensus disorder prediction 140 170 - -
Car08g00835 252 MobiDBLite consensus disorder prediction 193 252 - -
Car08g00835 252 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Car08g00835 252 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00835 Car17g00028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00183 Car-Chr4:1010728 Car08g00835 Car-Chr8:5589206 1.06E-47 dispersed
Car04g01076 Car-Chr4:6196966 Car08g00835 Car-Chr8:5589206 1.98E-44 dispersed
Car08g00835 Car-Chr8:5589206 Car14g01786 Car-Chr14:13982357 4.45E-65 dispersed
Car06g00752 Car-Chr6:5204724 Car08g00835 Car-Chr8:5589206 5.89E-55 transposed
Car17g00028 Car-Chr17:122751 Car08g00835 Car-Chr8:5589206 1.05E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3994 PF03195 LOB 1.30E-38 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00835 K21994 - csv:101220603 319.701