Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00844 ATGGCTGGCCTATCGCTCAAGTGCGGGGATTGTGGCGCTCTTTTGAGATCCGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCTCATTCCAACTTCTCTGAGTCCACTGAAGCTGTGCTTAATCTCATCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCAATAAGCTTGGAGGCCCCGAAGGTAGCTGCGGAGTCAGAAGATGGTGGGGATGCAAGTGCTTGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAGTATATTGGAGGAACTTGAAGCTATGGGTTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGAAATGCAAGTCTGGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCTAAGGATACAAAGGTCGAGGCTCCCAAGCCTGCTCTTACACCTGAGCAACTGAAAGCAAAACAACAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGCTAGCAGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATGGAGGAATTAAATGAGAGAAAAAGAATATTGGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCGGAAAGAAGACGGAGACTTGGGTTGCCAGCAGAAGATCCTTCAACTGCGAAACCTCCCGCCCCAGTTGTTGAAGAGAAAAAGCTCTCGTTGCCGGTTAGACCTGCTTCAAAAGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGGGCGTTTCAAACCCTTCTAACTTACGTGGGAAACGTGGTGAAAAATCCTGATGAAGAGAAGTTCAGAAAGATTAGACTCAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATCGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGATGAGTTCTTGTTTTTGCCCAGAGACAAAGTTGACAGAGCAGTGCTTAATTCAGCTGGCTCTGAGCTCGACTCTGCAATTAAGAATCCCTTCTTTGGTGTTCTTTAA 1236 46.04 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASACKSEEMVVPEVNKSILEELEAMGFPTARATRALYYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPALTPEQLKAKQQELRERARKKKEEEEKLAEREREKERIRIGKELLEAKRMEELNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKLSLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGDEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5648476 5656073 - Carg11080-RA Car08g00844 153418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00844 411 Pfam PUB domain 318 389 IPR018997 -
Car08g00844 411 MobiDBLite consensus disorder prediction 253 270 - -
Car08g00844 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Car08g00844 411 MobiDBLite consensus disorder prediction 253 280 - -
Car08g00844 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Car08g00844 411 Coils Coil 181 215 - -
Car08g00844 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Car08g00844 411 Coils Coil 224 261 - -
Car08g00844 411 MobiDBLite consensus disorder prediction 171 208 - -
Car08g00844 411 MobiDBLite consensus disorder prediction 183 208 - -
Car08g00844 411 Pfam UBA/TS-N domain 112 147 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00844 Car-Chr8:5648476 Car15g00920 Car-Chr15:6041441 5.89E-07 dispersed
Car08g00844 Car-Chr8:5648476 Car05g00614 Car-Chr5:3646567 1.20E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00844 K24348 - csv:101215434 697.582