Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car08g00902 | ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAGTGCTCAGCGCCGTCGTCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGACTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACTTCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGACGACGACGACGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCCGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATGCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACACCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCAATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAAGCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACAGACATTATAGAAGACAAGGAAGTTTTTGTCGGGGATTCATTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAGCAACAGCCATTATAGAAGATTAA | 1899 | 47.39 | MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPSAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNETEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMPYNDTIYVEDKEEEEEEEEEDDDDEEEGAAAPQGVGNVDVNVLAEEERRETRPEPTATAIIQESSTVKDDKEVFAGHAVVMVDVANEEPEPTPTAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEATTAAIVEDKEVFAGDSVVMMEATNEGTEATRTDIIEDKEVFVGDSLIMMEAAKEEAEPTATAIIED | 632 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6042778 | 6045823 | - | Carg11022-RA | Car08g00902 | 153476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 115 | 161 | - | - | |
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 369 | 388 | - | - | |
Car08g00902 | 632 | ProSiteProfiles | ARID domain profile. | 53 | 144 | IPR001606 | GO:0003677 | |
Car08g00902 | 632 | Coils | Coil | 367 | 387 | - | - | |
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 211 | 254 | - | - | |
Car08g00902 | 632 | Coils | Coil | 297 | 317 | - | - | |
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 211 | 228 | - | - | |
Car08g00902 | 632 | Pfam | HMG (high mobility group) box | 248 | 315 | IPR009071 | - | |
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 369 | 400 | - | - | |
Car08g00902 | 632 | Pfam | ARID/BRIGHT DNA binding domain | 57 | 103 | IPR001606 | GO:0003677 | |
Car08g00902 | 632 | MobiDBLite | consensus disorder prediction | 115 | 157 | - | - | |
Car08g00902 | 632 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 248 | 315 | IPR009071 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car08g00902 | Car-Chr8:6042778 | Car17g00085 | Car-Chr17:496148 | 0 | dispersed | |
Car08g00902 | Car-Chr8:6042778 | Car09g00069 | Car-Chr9:345113 | 5.34E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3997 | PF00505 | HMG_box | 5.50E-15 | CL0114 | Car | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car08g00902 | - | - | cmax:111494342 | 1010.75 |