Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00902 ATGGTAGAAGAGGAAAGAACTGAAGCAGGCTGGGATAGCAAGAAGGAGTTGACCATGACATCGACTTCTTCTGCTGGGGGGAAGCAACTGGCCGTGGTTGAAGCTCCTTCTAACTGTGTTCCATACCCGCCACCGCAAACGACGTATGAGGATCTCATAGCCGATCCCAAGCTCTTTATGGCGTCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTGGACCTGCATCGGCTTTTCGTGGAGGTCACTGCTCGTGGTGGCCTTGAGAAGATTTACTTCTTTAAAGCCGTGGGATGGACACCAAAAGTTTCTGATTCCTCTCCAACCCCAAGTGCAGTGCCAATTCCGACACAAGGGACGATGACCTCTATGTTGCCGCCATCCAATCGGCCAGCACCCCAGCAGCAGCCACAGACTACTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTCGGTACCACCAGCGGGAGGGTTTCCGGTGGTTGGAGTCATTGATGGAAAATTTGAAAGCGGATATCTCGTTACTGTTACTGTAGGAAATGAGAAGCTAAAAGGTGTGCTTTATATGACTCCTCCAGAGCAACCTGCTCAACAAGTGTTCCAGCCTGGTAGTGTTTTCACCAAAGATGGTACTACCTCCACTACACCAAGTGCTCAGCGCCGTCGTCGGAGGAAGAAATCCGAGATCAAACGAAGGGATCCAGCTCATCCAAAGCCGAATAGAAGTGGCTACAATTTCTTCTTCGCCGAGCAGCATGCTAGACTCAAACCATTACACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAATGAGACTGAAAAAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAACGATACAGAATTGAGATGGAGAATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTCATGCAGTGCCATTACAGCAGCTTCTTCCTGGGACAGACCTGAATATGGTCTATGCTGCTGACAAAAACGAAGAAACCGAGGGTGGCGAACTTCCTCATATGCCGTATAATGATACAATTTATGTTGAAGATAAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGACGACGACGACGAAGAAGAAGGTGCAGCAGCACCTCAAGGAGTTGGCAATGTGGATGTTAACGTCTTGGCTGAGGAGGAACGCCGCGAGACTAGACCAGAACCAACAGCAACAGCCATTATACAAGAGAGTAGCACGGTCAAGGACGATAAGGAAGTTTTCGCCGGGCATGCAGTGGTAATGGTGGATGTGGCAAATGAAGAACCAGAACCAACACCAACAGCCATTGTAGAAGATAAGGAAGTTTTCGCCGGGGATTCGATGGTAATGGTGGTGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCAATGGTAATGGTGGAGGCTGCAAATGAAGAACCACAACCAACAGCTACAACCATTATAGAAGATAAGGAAGTTTTTGCCGGAGATTCGATGGTAATGGTGGAGGCGGAAAATGAAGAACCAGAACCAACAACAGCAGCCATTATAGAAGATAAGGAAGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGTGGCAAATGAAGAACCAGAAGCAACAACCGCAGCCATTGTAGAAGATAAGGAGGTTTTCGCCGGGGATTCGGTGGTAATGATGGAGGCGACAAATGAAGGAACAGAAGCAACAAGAACAGACATTATAGAAGACAAGGAAGTTTTTGTCGGGGATTCATTGATAATGATGGAGGCAGCAAAGGAAGAAGCAGAGCCAACAGCAACAGCCATTATAGAAGATTAA 1899 47.39 MVEEERTEAGWDSKKELTMTSTSSAGGKQLAVVEAPSNCVPYPPPQTTYEDLIADPKLFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGLEKIYFFKAVGWTPKVSDSSPTPSAVPIPTQGTMTSMLPPSNRPAPQQQPQTTATELPAVAPSSVPPAGGFPVVGVIDGKFESGYLVTVTVGNEKLKGVLYMTPPEQPAQQVFQPGSVFTKDGTTSTTPSAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNETEKTVYQEKAMKDKERYRIEMENYREKLRTGQIISHAVPLQQLLPGTDLNMVYAADKNEETEGGELPHMPYNDTIYVEDKEEEEEEEEEDDDDEEEGAAAPQGVGNVDVNVLAEEERRETRPEPTATAIIQESSTVKDDKEVFAGHAVVMVDVANEEPEPTPTAIVEDKEVFAGDSMVMVVAANEEPQPTATTIIEDKEVFAGDSMVMVEAANEEPQPTATTIIEDKEVFAGDSMVMVEAENEEPEPTTAAIIEDKEVFAGDSVVMMEVANEEPEATTAAIVEDKEVFAGDSVVMMEATNEGTEATRTDIIEDKEVFVGDSLIMMEAAKEEAEPTATAIIED 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6042778 6045823 - Carg11022-RA Car08g00902 153476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00902 632 MobiDBLite consensus disorder prediction 115 161 - -
Car08g00902 632 MobiDBLite consensus disorder prediction 369 388 - -
Car08g00902 632 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Car08g00902 632 Coils Coil 367 387 - -
Car08g00902 632 MobiDBLite consensus disorder prediction 211 254 - -
Car08g00902 632 Coils Coil 297 317 - -
Car08g00902 632 MobiDBLite consensus disorder prediction 211 228 - -
Car08g00902 632 Pfam HMG (high mobility group) box 248 315 IPR009071 -
Car08g00902 632 MobiDBLite consensus disorder prediction 369 400 - -
Car08g00902 632 Pfam ARID/BRIGHT DNA binding domain 57 103 IPR001606 GO:0003677
Car08g00902 632 MobiDBLite consensus disorder prediction 115 157 - -
Car08g00902 632 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 248 315 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00902 - - - cmax:111494342 1010.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00902 Car-Chr8:6042778 Car17g00085 Car-Chr17:496148 0 dispersed
Car08g00902 Car-Chr8:6042778 Car09g00069 Car-Chr9:345113 5.34E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00085 . 1 326 ARID Transcription Factor Family AT1G04880 53.0 9.5e-94 341.3
Car08g00902 . 45 344 ARID Transcription Factor Family AT1G04880 52.0 7.8e-80 295.0
Car16g01214 . 163 432 ARID Transcription Factor Family AT1G20910 59.6 1.5e-87 320.5
Car06g00146 . 206 483 ARID Transcription Factor Family AT1G20910 54.2 4.6e-76 282.3
Car09g00069 CCT 16 315 ARID Transcription Factor Family AT1G76110 67.1 1.1e-113 407.1
Car01g01565 CCT 16 326 ARID Transcription Factor Family AT1G76110 63.9 2.4e-110 396.0
Car16g01214 . 154 462 ARID Transcription Factor Family AT1G76510 61.0 4.7e-106 382.1
Car06g00146 . 197 513 ARID Transcription Factor Family AT1G76510 56.8 1.3e-95 347.4
Car01g01610 . 5 218 ARID Transcription Factor Family AT1G76510 51.5 3.1e-73 273.1
Car14g01069 CCT,ECH 1 781 ARID Transcription Factor Family AT3G43240 58.3 6.3e-260 894.0
Car01g00013 . 1 778 ARID Transcription Factor Family AT3G43240 58.7 1.0e-257 886.7
Car17g00618 CCT,ECH 2 771 ARID Transcription Factor Family AT3G43240 56.7 4.0e-254 874.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3997 PF00505 HMG_box 5.50E-15 CL0114 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00902 Car_Chr08 FPKM 0.0 0.0 3.416518 3.017647 0.0 4.13895 3.028503 0.0 1.233217 2.770826