Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00910 ATGGCGGCACTCAGCAAATGGTCTTCTCTGTCTCTGCTTGCGCTTGCAATGGTGTTCTTCGTAACAATGGCTCTGGTGCGCAAAGAAGAGGTCTCTGGAATTAGGACTGTGTTAGCGACGAAGTTTCAGAGCTCTATCAACTCATCAATGGCGACTAGGGCGGTGAATGATGATTCGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAAAGGAGAAAATTGGGATTTTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGTTGGCGTTGCGACCCCAATTGGCACCACAAACGTAAACGCCTAGCTGAATGTGGCATTGGGTTCGGCCGAAATGCTATCGGTGGTCGTGATGGTCGTTTCTACGTTGTCACTGATTCGAGCGACAACGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATCGTATTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGCGGGGTCAATGTACACATTGCCAATGGCGCTTGCATCACAATACAGTTTGTGACTAATATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTCAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATCGACCACAATTCACTCTCTAATTGTGCCGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACCATCTCCAACAATCACTTCACCCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCATTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGAAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACCAAACGAGTTGAAACAGCAGAGAGCGAATGGAAAGGGTGGAACTGGAGATCAGAAGGAGATATGCTGCTGAACGGTGCTTATTTCACCCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCGAGAGCCTCCAGCTTAGGAGCCAAATCCGCTTCCATGGTTGCCTCCATCACTTCTTCAGCAGGTTCGCTCCCTTGCCGCCGTGGCCATCCCTGCTAG 1347 48.03 MAALSKWSSLSLLALAMVFFVTMALVRKEEVSGIRTVLATKFQSSINSSMATRAVNDDSEELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWHHKRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVASITSSAGSLPCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6115148 6119577 + Carg11014-RA Car08g00910 153484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00910 448 Pfam Pectate lyase 186 363 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01087 Car08g00910 CCT
Car08g00910 Car14g01674 CCT
Car08g00910 Car14g01674 ECH
Car06g01087 Car08g00910 ECH
Car08g00910 Car17g00103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01467 Car-Chr4:8499852 Car08g00910 Car-Chr8:6115148 0 dispersed
Car08g00910 Car-Chr8:6115148 Car19g00112 Car-Chr19:937841 0 dispersed
Car18g00831 Car-Chr18:9330760 Car08g00910 Car-Chr8:6115148 0 dispersed
Car14g01674 Car-Chr14:13329725 Car08g00910 Car-Chr8:6115148 0 wgd
Car17g00103 Car-Chr17:607458 Car08g00910 Car-Chr8:6115148 0 wgd
Car02g01451 Car-Chr2:9460031 Car08g00910 Car-Chr8:6115148 0 wgd
Car06g01087 Car-Chr6:8171712 Car08g00910 Car-Chr8:6115148 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00910 K01728 - csv:101217580 843.573