Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00914 CAAAAAGCCGTAAATAAAGGCGTTGAAATCTTCCTCCTCGATTCTAGGATTCATCTGCCTCTGTTTGGTTGCGGTGGACTTCATTTATGGCGACTGATGCTGATTTTTCATCGCGAGTTGAGAGGTATTGAACTGTTGTTGTATGATCATGTTGTAGCTCTGGTTGGACGGATGGTTGTTAAAATGTTGAGTTTGCTGCTTCTTGCTTTTCTGTTTAATACTTCACATGGATTGAATTCAGAAGGGTATTTTCTCTTGGAGCTGAAAAATGGTCTTTCTGATCCGTATCGTTTGTTGAGAAATTGGGATCCGAGCGATGGAACACCGTGCCAATGGACCGGTGTGAACTGTACTTCTGGTGTGGAACCAGTGGTCTATTCTCTTGACTTGAGCTCGAAGAATCTTTCGGGTCCTTTGAGCTCGAGCATTGGTGAACTAATCCACCTAACTTATCTTGATTTTTCCTTCAATGGATTCACGGGAAGTATACCGAAAGAGATTGGGAATTGTATGAGGTTGGAGTATCTTTTTCTGCAAAACAATAAGTTTGATGGGGAACTTCCATCTGAATTGGGGAAGTTGACTTCATTGGTTAAGTTGAATATATGTAATAATAGAATCCATGGTTCTTTTCCTGAGGAGATTGGGAATCTAGAATCCTTGTTTGAATTAGTTGCATATACGAACAACATAACGGGGCCATTGCCTCGTTCGTTTGGGAATCTCAAGAACTTGAGGATGTTTCGAGCAGGACAAAATGCGATTTCGGGAAGCTTACCAGCTGAAATAGGTCAGTGTAAGAACTTGGAAACGCTTGGCCTTGCTCAAAATCAGCTAGAAGGGGAATTACCAAAGGAGATTGGTATGCTTAGAAATTTGACTGAATTGATTCTTTGGGAGAATCAGTTTTCTGGCGTTCTACCGAAAGAGCTCGGTAATTGTACGAGTCTAACGGTTTTTGCTCTGTATCAGAACAATGTTGGTGGATCCATACCTAAGGAATTTGGGAACTTAAGCTCTTTGAAGAAGTTGTATATATACCGGACTGCGTTGAACGGAACCATTCCGAGGGAGCTTGGGAACCTTTCTCAGGCATTGGAGATCGACTTCTCAGAGAACTTTTTGAGTGGTGAGATACCTAAAGAGTTTAGTAACATAAAAGGTCTCCGATTACTGTATCTTTTTCAAAATCAGCTGACTGGTGTTATACCAAATGAACTTAGTAGCCTGAGTAATTTGACTAAACTTGATCTTTCAATCAACAACCTCAAGGGTCCTGTTCCGTTCGGGTTTCAGTATATGCCTGCATTGAGTCAATTGCAGCTTTTCGAAAACAGTTTGAGTGGCACCATTCCTCAAGGACTTGGACGTTATAGCCCGCTGTGGGTGGTCGACTTTTCGGACAACCTCTTGACAGGACGAATACCTCCCCATCTATGTCGTCACTCTAACCTGATCATCTTGAACTTGGTGTCAAATAACCTTTATGGAAATATACCTACCGGGATCTTGAACTGCGAATCGTTGTTGCAAATTCGTCTCATCGGAAACAGGTTTAGTGGCAGCTTTCCATCAGAGTTGTGTAACTTGATGAATCTTACTGGCATTGAATTGGACCAGAATAGATTCAGTGGTCCGCTTCCTCCAGAAATTAAGAATTGCCAAACGTTGCAAAGGCTGCATATTTCAAACAACTACTTTACATCTAATTTTCCTAAGGAGATAGGGAAGCTTGTGCAGTTGGTGTCGTTCAATGCTTCATCGAATCGTTTTACTGGGTCGATTCCACCAGAAATTGCCCACTGCAAGACTCTCCAACGGCTCGATCTCAGCCACAACAGGTTTGAAAATACGTTGCCGAGCGAGATTGGATCTCTTTTAGAGCTGGAAATTCTCAGAGTTTCAGAAAATAAGTTATCAGGCAACATACCTGCAGAATTGAGAGACCTCTCCCGTTTGACAGAATTGCAAATGGGAGGTAATTCATTCTCTGGTAGCATTCCTATGGAGTTGGGGTCTCTAAAAAGCTTGCAGATTGCTCTGAATCTCAGTTTCAATATGTTAACCGGAACAATACCATCAGAACTTGGAAACCTGAGTCTACTGGAATATCTCCTGCTTAATAACAATCGCTTGACCGAATATGCATACACCATGAAAGTCACAGAAAAATGTGACATATACAGCTATGGGGTAGTTTTACTAGAACTGCTAACCGGAAAAACTCCGGTACAGCCAGTAGATCAAGGAGGCGATCTCGTCACATGGGTCAAAATCTATCTACGAAACCATTCGATGTCGTCTGGAATACTAGACGAGCGGCTGAATCTTCAAGACCAATCCACGGTCGATCACATGCTGACAGTCCTAAAAATTGCTTTGATGTGCACAAGTCTATCTCCTTGTCAACGACCATCGATGCGGGCAGTCGTATTGATGCTTTTAGAATCTACCGAGCCCGACGAAGATCATATTCCAGCTTTAACTGATAATCTAGCTCCTAAGGACGATGCTGTCTCGTGTCAAGGGAAATTGAAAATACGGCTTAAATCGACTGAAATAGCTATTGGTTCGGGTTCGAACCAGTTTGGTTGGTCGTATAAGAAACATACCCAAGCCGATGAGAAACTACGAATCGATGTTTTATTAGCAGTTCATTACCCAAGTGAGCTTGATGTAATTAACATGGACTCATTCTCTTCTCGTCGAAGGTTCAAATGTCCATATCTCATTTGTAATACTAAT 2745 42.0 QKAVNKGVEIFLLDSRIHLPLFGCGGLHLWRLMLIFHRELRGIELLLYDHVVALVGRMVVKMLSLLLLAFLFNTSHGLNSEGYFLLELKNGLSDPYRLLRNWDPSDGTPCQWTGVNCTSGVEPVVYSLDLSSKNLSGPLSSSIGELIHLTYLDFSFNGFTGSIPKEIGNCMRLEYLFLQNNKFDGELPSELGKLTSLVKLNICNNRIHGSFPEEIGNLESLFELVAYTNNITGPLPRSFGNLKNLRMFRAGQNAISGSLPAEIGQCKNLETLGLAQNQLEGELPKEIGMLRNLTELILWENQFSGVLPKELGNCTSLTVFALYQNNVGGSIPKEFGNLSSLKKLYIYRTALNGTIPRELGNLSQALEIDFSENFLSGEIPKEFSNIKGLRLLYLFQNQLTGVIPNELSSLSNLTKLDLSINNLKGPVPFGFQYMPALSQLQLFENSLSGTIPQGLGRYSPLWVVDFSDNLLTGRIPPHLCRHSNLIILNLVSNNLYGNIPTGILNCESLLQIRLIGNRFSGSFPSELCNLMNLTGIELDQNRFSGPLPPEIKNCQTLQRLHISNNYFTSNFPKEIGKLVQLVSFNASSNRFTGSIPPEIAHCKTLQRLDLSHNRFENTLPSEIGSLLELEILRVSENKLSGNIPAELRDLSRLTELQMGGNSFSGSIPMELGSLKSLQIALNLSFNMLTGTIPSELGNLSLLEYLLLNNNRLTEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPVDQGGDLVTWVKIYLRNHSMSSGILDERLNLQDQSTVDHMLTVLKIALMCTSLSPCQRPSMRAVVLMLLESTEPDEDHIPALTDNLAPKDDAVSCQGKLKIRLKSTEIAIGSGSNQFGWSYKKHTQADEKLRIDVLLAVHYPSELDVINMDSFSSRRRFKCPYLICNTN 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6145582 6150270 - Carg11010-RA Car08g00914 153488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00914 915 Pfam Leucine rich repeat 604 662 IPR001611 GO:0005515
Car08g00914 915 Pfam Leucine rich repeat N-terminal domain 79 117 IPR013210 -
Car08g00914 915 Pfam Protein tyrosine and serine/threonine kinase 714 812 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00914 - - - csv:101221337 1051.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00914 Car-Chr8:6145582 Car17g00105 Car-Chr17:653769 3.23E-40 dispersed
Car08g00911 Car-Chr8:6127187 Car08g00914 Car-Chr8:6145582 7.51E-16 proximal
Car14g01670 Car-Chr14:13300897 Car08g00914 Car-Chr8:6145582 5.31E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g839 . . . . . . . Bma05g01270 Cmo08g01010 Cmo17g00120 . . . . . . . . . . . . . . . . . . . . . Cone14ag0207 . . . . . Chy05g00265 . . . . . . . . . . . . . . Car08g00914 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001136 3 4 2 2 3 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 1 1 2 2 1 0 1 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89060 PF07714 PK_Tyr_Ser-Thr 3.30E-05 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00914 Car_Chr08 FPKM 1.685296 1.491334 0.57847 0.537245 1.461215 1.623937 2.001236 6.594286 7.286575 6.851012