Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00916 ATGGCGGCTCCAAACTGCACACTGACTTTGGCTCAGCTCCTCGGCCCCAATGTCACGAACTCCGGCGCCGCTGCCTCCTTCATCTGCGATCAATTCTCTACAACTACCACCAATTTCTCCGACACCAAATTCGCCGTCGACACCGTCTATCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCTAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTCTTTTACTACCTCTTCGGCTTCGCCTTTGCCTTCGGCAGCCCCTCCAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCAAGTCAATCCCCTCCGCCACCCCTACCCCCACCGATTATAGCTTCTTCCTTTATCAATGGGCTTTCGCCATCGCCGCCGCCGGCATCACCAGCGGTTCAATTGCCGAGCGGACCCAATTCGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGCTTTGTTTACCCGGTGGTTTCCCACTGGTTTTGGTCTCCAGACGGTTGGGCCAGCCCCTCCCGGTCCAATGGAAATCTCTTATTCGAAACCGGAGTCATCGATTTTGCCGGTTCGGGCGTGGTTCACATGGTGGGTGGAATCGCCGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGTCGGTTCGAAAAAACCGGACGATCCGTTGCGTTACGAGGCCATAGTGCTACGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACCAAAATCCTAGTTCCGTACGGTGTGGGTGATTTCTACGGACAGTGGAGCGCCGTCGGTCGGACAGCCGTTACAACCACCCTCGCCGGTTGCACAGCAGCGTTGACTACCCTTTTCGGAAAAAGAATTCTCTCCGGCCACTGGAACGTCACCGACGTTTGCAACGGATTACTCGGCGGCTTCGCCGCCATAACCTCCGGCTGCTCAGTGGTGGAGCCATGGGCGGCAGTGATATGCGGATTTGTGGCGGCGTTGGTGTTAATCAGCTTGAACAAACTGGCGGAGAAGGTGAAATTTGATGACCCATTGGAGGCAGCACAATTGCACGGCGGGTGCGGCGCGTGGGGTATAATTTTCACAGCATTGTTCGCGACAAAGGAGTATGTGAACGAGGTATACGGCGGAGAGATTGGGCGGCCACACGGGTTGTTCATGGGCGGTGGAGGGAAGTTGCTGGCGGCGCATCTGATACAGATTTTGGTGATTACTGGGTGGGTAAGCATCACAATGGGACCATTGTTTTTCGGGCTTCATAAACTGAAGCTACTGAGAATCTCGCCGGCGGATGAGATGGCCGGAATGGACATGACACGTCACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAGTCATCGGCGAATGGGGTCCAGATGAGAAGGATTGAGCCAAGGGAAACCAGTCCAATTGGAAATTAA 1512 54.96 MAAPNCTLTLAQLLGPNVTNSGAAASFICDQFSTTTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGSPSNAFIGRHFFGLKSIPSATPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGNLLFETGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFEKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGVGDFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISLNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKEYVNEVYGGEIGRPHGLFMGGGGKLLAAHLIQILVITGWVSITMGPLFFGLHKLKLLRISPADEMAGMDMTRHGGFAYVYHDEDESSANGVQMRRIEPRETSPIGN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6158119 6159630 + Carg11008-RA Car08g00916 153490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00916 503 ProSitePatterns Ammonium transporters signature. 206 231 IPR018047 GO:0008519|GO:0016020|GO:0072488
Car08g00916 503 Pfam Ammonium Transporter Family 50 475 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00188 Car-Chr6:1131490 Car08g00916 Car-Chr8:6158119 2.14E-22 dispersed
Car08g00916 Car-Chr8:6158119 Car14g00033 Car-Chr14:203181 7.87E-20 dispersed
Car12g00940 Car-Chr12:9469764 Car08g00916 Car-Chr8:6158119 0 transposed
Car14g01662 Car-Chr14:13259126 Car08g00916 Car-Chr8:6158119 0 wgd
Car02g01463 Car-Chr2:9555598 Car08g00916 Car-Chr8:6158119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00916 K03320 - csv:101212168 909.057