Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00961 ATGAGTTCTTCATTATTTCACTGCCAAGACTCTGATTTCTCGCCGGAATCTTCCTTGAGCTCCTTCGAATCTCTCCGATGGGAAGCTTTTCAAAAAAACGACAACTCTCTGCTCTTTAACGAGAATGATTCCGGCGAAATGCTCCTTCACAACTTGATCTCAGAGCCCACCTCATACCCGACGGGGAATTCTCTCCGGCAGGATCCGATCAAGGAAGAGGAGGTGGATTCGCTCGGAGAAGAAGAACCCCACAAGCCAAAATCCTACAGAGGAGTCCGCCGGCGTCCATGGGGGAAATTCGCGGCGGAGATACGGGATTCAACTAGGCATGGAGTTCGGGTTTGGCTCGGAACGTTCGATAGTGCCGAGGCGGCTGCTTTGGCTTATGATCAAGCCGCTTTCTCGATGCGGGGCGCCGCCGCCGTTCTCAATTTTCCAGTGGAAAGAGTTCAGGAATCTCTCAAGGAGATGGAAATGATCAACTCCGCCGCATACGGCGGCGACGGTGAATCTCCGGTGGTTGCTTTGAAGAGAAAACATTCTATGAGGAATAAATCAAGAAGAAAGAGCAAAAATAAAGAAGAAATTGGGAAAACAGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGCCCTGATTATTTGGAAGAACTCTTGGAGCTATCTGAGAATCTCCGGCCATGGTGA 684 49.27 MSSSLFHCQDSDFSPESSLSSFESLRWEAFQKNDNSLLFNENDSGEMLLHNLISEPTSYPTGNSLRQDPIKEEEVDSLGEEEPHKPKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAAYGGDGESPVVALKRKHSMRNKSRRKSKNKEEIGKTESNVVVLEDLGPDYLEELLELSENLRPW 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6422238 6422921 - Carg10961-RA Car08g00961 153535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00961 227 PANTHER DNA-BINDING DOMAIN 28 220 IPR044808 GO:0003700|GO:0009873
Car08g00961 227 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677
Car08g00961 227 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Car08g00961 227 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700|GO:0006355
Car08g00961 227 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Car08g00961 227 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Car08g00961 227 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Car08g00961 227 MobiDBLite consensus disorder prediction 178 197 - -
Car08g00961 227 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Car08g00961 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 220 - -
Car08g00961 227 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00961 Car-Chr8:6422238 Car07g00173 Car-Chr7:1007293 8.75E-32 dispersed
Car17g00147 Car-Chr17:921956 Car08g00961 Car-Chr8:6422238 1.30E-20 wgd
Car19g00066 Car-Chr19:572150 Car08g00961 Car-Chr8:6422238 3.48E-47 wgd
Car02g01500 Car-Chr2:9715850 Car08g00961 Car-Chr8:6422238 1.56E-46 wgd
Car06g01142 Car-Chr6:8477035 Car08g00961 Car-Chr8:6422238 1.32E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4002 PF00847 AP2 1.10E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00961 K14516 - csv:101206564 326.25