Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00962 ATGATTTTGGTATCCTACTTGTCCAATACACCATGCAAAATGGACGTGGAAGGGAGGTCCGGCAATGATCAGGGTGGCGAGGTTCGATACCGCGGAGTGCGGCGGCGTCCATGGGGGAAGTTCGCTTCTGAGATTCGTGACTCATCGAGACAAGGGGCTCGGATTTGGCTTGGAACTTTCAACACGGCAGAGGAGGCAGCTCGGGCCTATGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCTTGAATTTTCCTGATGAATATCCGTCTCTCGGTGGTAGTTCTTCTTCCTCTTCTTCTTCCTCTTCCTCTTCTGGTCTAGCTCCGAGGCGCCATGGCCCGGGTGAGCGCCAAGTGATCGAATTCGAATGTGTCGATGATAGGATCCTGGAGGAACTTCTTGAGTACGAGGAGAAAAGGAAGAAGAACTGA 438 52.74 MILVSYLSNTPCKMDVEGRSGNDQGGEVRYRGVRRRPWGKFASEIRDSSRQGARIWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPDEYPSLGGSSSSSSSSSSSSGLAPRRHGPGERQVIEFECVDDRILEELLEYEEKRKKN 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6429665 6430102 - Carg10960-RA Car08g00962 153536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00962 145 MobiDBLite consensus disorder prediction 92 120 - -
Car08g00962 145 Pfam AP2 domain 29 80 IPR001471 GO:0003700|GO:0006355
Car08g00962 145 MobiDBLite consensus disorder prediction 92 110 - -
Car08g00962 145 ProSiteProfiles AP2/ERF domain profile. 29 87 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01142 Car08g00962 CCT
Car08g00962 Car14g01624 CCT
Car06g01142 Car08g00962 ECH
Car08g00962 Car14g01624 ECH
Car08g00962 Car17g00147 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00962 Car-Chr8:6429665 Car17g00147 Car-Chr17:921956 7.41E-22 dispersed
Car14g01624 Car-Chr14:13046883 Car08g00962 Car-Chr8:6429665 1.31E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4003 PF00847 AP2 1.30E-15 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00962 - - csv:101206390 167.162