Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00966 ATGGAGACGGCGGCGGAAGGTCGGAGTTCGGCGGAGAAGCTTTCCGTCAACCACGCCTACGACCGGCAAAGAGAATTGAAAGCTTTAGACGAATCAAAATTAGGGGTAAAAGGACTGGTGGACTCGGGCTTGACGAACCTCCCAAAAATCTTCCTCCACCAAAACCAGAAGTCCTCCTCCACGGCCGCCCTACCATCCGACGACTCCCGTTTCACCATCCCCATCATCGATCTTCACTCAACGGCCCAAAACCCCCAATTGCGATCCATCATAATCGACCAAATCCGAGACGCTTCCGAAAATTGGGGGTTCTTCCAAATCCTCAACCACGGCATCCCCTCAACCGTCACGGCGGAGATTCTCGCCGGAATCCGACGGTTCCACGAGCAAGAGGGCGAACAAAAGAAGCAATTCTACTCTCGCGACTACACCAAAACGGTACTCTACAACACCAATTTCGATCTCTACCAAGCCCCTGTTACAAATTGGAGAGACACACTAACCTGCGCAATCGCACCACGAGGGGCTGAACCCAAAGACATACCCTTAATCTGTAGGGACATAATCCTTAATTACACCAAAAGGGTACTCGAATTAGGGAAGACCCTATTCGAATTGGTGTCCGAAGCTCTAGGGCTCGACCCCAATCGGTTGAACGAAATCGGCTGCAGCGAGGGGCTTGTCCTGTTCGGCCATTACTACCCAGCCTGCCCTGAACCAGAGCTCGCAATTGGAACCAGCGACCACTCCGACAGCAGTTTCTTAACAGTGCTTTTACAGGACCAAATCGGGGGGCTTCAATTCCGCCATGATGACCGGTGGGTTGATGTCCGGCCAATCGACGGCGCGCTTGTGATAAACATCGGCGATATGTTACAGCTTGTTTCGAATGGTCGATTGAAGAGCTTGAATCATAGGGTGGTGGCTAAAAGTGAAGGGCCGAGGATATCGGTGGCGTGTTTTTTCAGGTACCAGTTTCCGCCGGAGAGTGAGAGGAAGGTTTATGGGCCGATAAAGGAGTTGATTTCGGAGGAGAAGCCGGCGGGCTTAATGGGTTCAAGCTTTGATCCGAGTCCTACCGGTTCGATCATAATGGCGGCCATTAAAACCGAGTCACTCAACTCGAGAAGATCCCAGTTGGAAGCGTTCGAGAATACAAAATCCGGCGTGAAGGGGCTGTTGGACGCCGGAATAACCAAAATCCCTTCTATATTTCACTGCCACGTCAAACCACATACCAAAACCGCCGCCACAGAGTCAGAGTCGAGTATTCCGATAATCGACCTCCACGGCAGCGTCGAAGAGGTGGTGGATGAAATCAGAAACGCTTGCCGGAAATGGGGGTTTTTCCAGGTGGTGAATCATGGGATTCCGGTGGAAGTTCTGGAGCAAGTAATCAATGGGGTTCGTGGGTTTCATGAACAAGATCCAGAGTTGAAGAAACAATTTTACAGCCGGGATCGTACCAAAAAAGTGAGCTATTTTTCGAATTTCGATCTGTTCCAATCGAAAGCGGCTAATTGGAGAGACACCCTTTCTTTTTCCATGGCTCCCAGCCTTCCCCTTCCCGAGGAGATCCCTCAAATTTGCAGAGAAATAGTGATGGAATACACAGAGCAAGTGAAGAAACTGGGATTAACTCTGTTTGAGCTGATATCAAAGGCTCTTGAACTTGGAGATACCCATTTGAAGGACATGGGCTGCGCAGAGGGGCTCCTAATGTTAGGCCATTACTACCCAGCCTGCCCCGAGCCTGACCTGACCCTTGGCACCACCAACCACACCGATGTGGCCTTCATTACCATACTTTTACAGGACCAAATCGGTGGCCTCCAAGTCTTCCATGACAATCAATGGTTCGATCAGATCATTTCGAACGATAAAATGGTGAGTGTGAGTCACCGGGTGGTAGCAAAGGAGATAGGGCCAAGAACTTCAATAGCAAGCCAGTTTCGACCATACATGGGGAAGGATGTGAAGAACTCAAAATTGTATGAACCGATTAAAGAGCTATTATCTGAAGACAACCCTCCAATATACAGACAGGTCAATCCTAAAGAATTTATAGAGCTACACTTTTCAAATGGGCTTGACGAGTGTTCTAAATTAGACTTGTTTAAGTTGTAA 2127 49.32 METAAEGRSSAEKLSVNHAYDRQRELKALDESKLGVKGLVDSGLTNLPKIFLHQNQKSSSTAALPSDDSRFTIPIIDLHSTAQNPQLRSIIIDQIRDASENWGFFQILNHGIPSTVTAEILAGIRRFHEQEGEQKKQFYSRDYTKTVLYNTNFDLYQAPVTNWRDTLTCAIAPRGAEPKDIPLICRDIILNYTKRVLELGKTLFELVSEALGLDPNRLNEIGCSEGLVLFGHYYPACPEPELAIGTSDHSDSSFLTVLLQDQIGGLQFRHDDRWVDVRPIDGALVINIGDMLQLVSNGRLKSLNHRVVAKSEGPRISVACFFRYQFPPESERKVYGPIKELISEEKPAGLMGSSFDPSPTGSIIMAAIKTESLNSRRSQLEAFENTKSGVKGLLDAGITKIPSIFHCHVKPHTKTAATESESSIPIIDLHGSVEEVVDEIRNACRKWGFFQVVNHGIPVEVLEQVINGVRGFHEQDPELKKQFYSRDRTKKVSYFSNFDLFQSKAANWRDTLSFSMAPSLPLPEEIPQICREIVMEYTEQVKKLGLTLFELISKALELGDTHLKDMGCAEGLLMLGHYYPACPEPDLTLGTTNHTDVAFITILLQDQIGGLQVFHDNQWFDQIISNDKMVSVSHRVVAKEIGPRTSIASQFRPYMGKDVKNSKLYEPIKELLSEDNPPIYRQVNPKEFIELHFSNGLDECSKLDLFKL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6442410 6446112 - Carg10956-RA Car08g00966 153540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00966 708 Pfam non-haem dioxygenase in morphine synthesis N-terminal 424 517 IPR026992 -
Car08g00966 708 Pfam non-haem dioxygenase in morphine synthesis N-terminal 73 174 IPR026992 -
Car08g00966 708 Pfam 2OG-Fe(II) oxygenase superfamily 575 621 IPR044861 -
Car08g00966 708 Pfam 2OG-Fe(II) oxygenase superfamily 231 323 IPR044861 -
Car08g00966 708 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 568 653 IPR005123 -
Car08g00966 708 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 225 326 IPR005123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00966 - - - pavi:110748981 718.383
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01145 Car08g00966 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01146 Car-Chr6:8493914 Car08g00966 Car-Chr8:6442410 1.24E-85 dispersed
Car08g00966 Car-Chr8:6442410 Car14g01619 Car-Chr14:13034122 6.69E-107 dispersed
Car14g01618 Car-Chr14:13032718 Car08g00966 Car-Chr8:6442410 3.65E-105 wgd
Car06g01145 Car-Chr6:8492165 Car08g00966 Car-Chr8:6442410 7.69E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g668 . . . . . . . Bma05g01073 Cmo08g01066 . . . Car06g01145 . . . . . . . . . . . . . . . . . . . . . . . Csa02g01076 Chy05g00336 Cme06g00508 . . . . Bpe05g00863 Bpe13g00564 . . . Cmo06g01338 . Cma08g01091 . Car08g00966 . . . . . . . . . . . . . . . . . Lsi09g01246 Csa03g01223 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00966 Car_Chr08 FPKM 3.766454 3.393708 1.935856 2.206528 6.024864 5.743479 4.133899 192.898788 208.093536 192.111145