Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g00972 | ATGCACGTGATCGAGATCGCCGGAGGAGCCGACGTCGCCGACAGCATAAACCAATTTTCTCGCCGCCGGCAGCGTGGGGTTGGTGTTCTCAGCGGTAGGGGCATGGTGGACGACGTCACTCTCCGGCAATCCGCTGCTGTGATTCCACTTCATGGGCGGTTCGAGATGCCGTCTTTGACCGGCTCTTTTCTTCCCGGTCGAGCCCCTCCCGGTTCGAGCGGGCTGACCGTATACCTCGCTGGCGGGCAGGGGCAGGCGGTCGGAGGGACAGTCGTGGGACCGCTGTTGGCGGCTGGGCCTGTAGTGTTGATTGCTGCTTCTTTTGCTAATGTAACATATGAGAGATTGCCTTTAGAAAACGATCATAAAGAAGATGAGGTTTATCCGGCCACCGCAGGTAGCGGAGAAGTGGAGGCGCCGCCGTCGCTGCCGTATCCTCCGACGGTAGCTTCAATTCATGAGATGATGGTACCAAATAATCATGGGGAACACCTTGGAATTGCTGGGCATCTTTGGGCACATGGAGACCATCTCATTGATCAAACTCGAATTTCTTCAGCAATCCCAAGCGCAACAGTGTAG | 582 | 56.19 | MHVIEIAGGADVADSINQFSRRRQRGVGVLSGRGMVDDVTLRQSAAVIPLHGRFEMPSLTGSFLPGRAPPGSSGLTVYLAGGQGQAVGGTVVGPLLAAGPVVLIAASFANVTYERLPLENDHKEDEVYPATAGSGEVEAPPSLPYPPTVASIHEMMVPNNHGEHLGIAGHLWAHGDHLIDQTRISSAIPSATV | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6470855 | 6471436 | + | Carg10950-RA | Car08g00972 | 153546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g00972 | 193 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 2 | 109 | IPR005175 | - | |
| Car08g00972 | 193 | MobiDBLite | consensus disorder prediction | 122 | 142 | - | - | |
| Car08g00972 | 193 | ProSiteProfiles | PPC domain profile profile. | 1 | 130 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00972 | Car-Chr8:6470855 | Car15g00111 | Car-Chr15:651206 | 2.88E-46 | dispersed | |
| Car17g00156 | Car-Chr17:964357 | Car08g00972 | Car-Chr8:6470855 | 3.60E-65 | wgd | |
| Car06g01150 | Car-Chr6:8516857 | Car08g00972 | Car-Chr8:6470855 | 8.88E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g00972 | - | - | cmax:111494863 | 320.857 |