Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00988 ATGAACAACAACTTCTCTACCTCTCTTCTTCTCACAATCTTCTTCTACATCTCTCCATCTCTTAGCACGTACAAAGATTGCTCCCTCGTGTTCAATTGTGGGAAGATCATCGACGTTGGCTTCCCTTTCTGGGGCGAAGATCGTCCACCAAGCTGCGGAGTTCCTAAATTGAAACTCACCTGTAAAGATAACGTCGTTGAGATCGAGATGATGCAAGTGGATCTGAGTAAAAAAACTCTCAAGATCGCACGAGACGATTATTTCGATGGCATCTGCCCAGATACTCGTCTGAAGAACACGACCCTGAACCCAAATCTCTTCGAAATGGGGAATGGGTACGTGAATCTAACACTGCTTTATGGGTGCGATTCACCTCTTATGGTGGTTCCTGACCATTTGAGATTCGAGTGTCCCGTCCATGGAGATGGGTGCGTGAAGCTTGGGGAGGAAATGGGGCTATGGGGCTGCAAGAACAGCGTTGTGGTTCCTGTTCGTGGCGATGAGGGGCTTTTGGTTGGAGTTTCCAAGATGGAAGAAGCCATTAGAGAAGGGTTTGAGGTGAAATGGAAGGTGGATAGCGGTGGTTGTGGTGGTGACTGTGTGGAGTCCGGTGGCGTTTGTGGTTATGATTTGAAGCTCCGCCGTGGGATATGTTTCTGTGAGAATGGTGTTTCTTCTTCTTCTTCAGCAGATGTTTGCCGGAAGGACGGTGGCGCCTCCGCCCACCAGGCGTCAGGCTCTGCGGCCAAGACAGGCCTTTGTGTTGGAGGGGCAACTTTACTAGGCTTATGCCTAGGATGCTTTGTCTTCTGCATCATACAACGAAATAAAGAACATGTTCGTCCCAAGTTGAAAAGCAAGGATCTTGCTTCGCCTCCTTCAACTGCACCTATTCTGATTCCCTCGACATTTCGCTCTAATACCATTCCTTCTTATCCTTATTCGAGATCCGGTCTCGAGAACGGGAGCTCCTACTTCGGAGCTCAACTCTTTACCTATGATGAACTTGAGGAAGCAACTCATAATTTTGATCCTTCAAAGGAGCTTGGAGATGGAGGTTATGGTGCTGTTTACTTTGGAACACTTAAGGATGGACGGATGGTTGCAGTAAAGCGTCTATACGAAAACAACTATAAACGTGTCGAACAATTCATGAACGAAGTCGAGATTCTCTCACGATTGCAACACCCGAACCTCGTGAAGCTTTACGGATGCACATCGAGACATAGTCGAGAGCTCCTCCTAGTATATGAGTACATTCCCAATGGAACAGTGGCTGACCATCTACATGGAAAACAAGCAAATTCAGGTCAGCTCAATTTGGCTGTTAGGCTAAAGATTGCTATAGAGACAGCTTATGCACTAGCTTACCTTCATCGTCAAGACATCATTCACCGCGATGTCAAAACCAACAACATTCTTCTAGACAACAACTTCAAAGTAAAAGTAGCTGATTTCGGGCTCTCACGGTTATTTCCCCTCGATGTAACCCATGTTTCAACTGCTCCACAAGGGACACCAGGCTATGTTGATCCCGAGTATTATCAGTGCTATCAACTAACTAGTAAGAGTGACGTGTATAGTTTTGGAGTCGTTTTGATTGAGCTGATATCGTCGCTGCAGGCAGTTGATATCAACAGGAATAGAAATGATATCAATTTGTCGAATATGGCTATTGATAGAATTCAAAAGCATAGTTTGGGTGATTTAGTAGATCCGGATCTTGGGTTTGAGAGGGATTATGTTGTAAGGTCTATGATAACGTCTGTGGCTGAGTTGGGTTTTCGATGTCTTCAACAAACAAGGGATGTGAGGCCTTCTATGGATGAAGTGGTGCAAGCTCTGAGAGAAATAGGGAAAGAAGTGGTAGATATTGGTAATGATATGTGA 1890 45.45 MNNNFSTSLLLTIFFYISPSLSTYKDCSLVFNCGKIIDVGFPFWGEDRPPSCGVPKLKLTCKDNVVEIEMMQVDLSKKTLKIARDDYFDGICPDTRLKNTTLNPNLFEMGNGYVNLTLLYGCDSPLMVVPDHLRFECPVHGDGCVKLGEEMGLWGCKNSVVVPVRGDEGLLVGVSKMEEAIREGFEVKWKVDSGGCGGDCVESGGVCGYDLKLRRGICFCENGVSSSSSADVCRKDGGASAHQASGSAAKTGLCVGGATLLGLCLGCFVFCIIQRNKEHVRPKLKSKDLASPPSTAPILIPSTFRSNTIPSYPYSRSGLENGSSYFGAQLFTYDELEEATHNFDPSKELGDGGYGAVYFGTLKDGRMVAVKRLYENNYKRVEQFMNEVEILSRLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGKQANSGQLNLAVRLKIAIETAYALAYLHRQDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYYQCYQLTSKSDVYSFGVVLIELISSLQAVDINRNRNDINLSNMAIDRIQKHSLGDLVDPDLGFERDYVVRSMITSVAELGFRCLQQTRDVRPSMDEVVQALREIGKEVVDIGNDM 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6684453 6688220 - Carg15866-RA Car08g00988 153562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00988 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Car08g00988 629 Pfam Protein kinase domain 346 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00988 629 Pfam Wall-associated receptor kinase C-terminal 155 222 IPR032872 -
Car08g00988 629 ProSiteProfiles Protein kinase domain profile. 343 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00988 629 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Car08g00988 629 Pfam Wall-associated receptor kinase galacturonan-binding 27 68 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00373 Car-Chr1:2094119 Car08g00988 Car-Chr8:6684453 1.82E-17 dispersed
Car05g00176 Car-Chr5:937808 Car08g00988 Car-Chr8:6684453 6.76E-89 dispersed
Car08g00988 Car-Chr8:6684453 Car15g00057 Car-Chr15:398012 0 dispersed
Car18g01099 Car-Chr18:11029769 Car08g00988 Car-Chr8:6684453 5.37E-13 dispersed
Car08g00988 Car-Chr8:6684453 Car11g00260 Car-Chr11:1441603 2.92E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89064 PF00069 Pkinase 3.40E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00988 - - cmax:111479894 1172.92