Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00996 ATGGAAGCTGTCGGCCGGAATATGCCCAACCAGTTTGTAAGCTTGAAGGAGACTGAGCTCTGCCTCGGCTTGCCCGGCGGCGGAGATCCGCCTCCTGACCTCACCCTTAAAGCTTCCGGCAAGAGGGGTTTCTCTCAAACTATTGATCTGAAGCTTAACATTCAGAGCAACGATGATGGTGGTGGAGATGTTCGTGTTGGAGTCGGTCTCAATGACGATATTAAGAACATTCCGACGAGCGTCGACGGTCCGAAGAGCCTCGGCTCCAAGGATCCGGCTAAGCCTCTTGTCAAGGCACAAGCTGTGGGTTGGCCACCAGTGCGATCGTACAGGAAGAACGTCATGGCCCAGAAGAACACGAGCGGTGAAGGAACGGAGAAAGCGAGCGGTGGCGCCGCCGTTGCATTTGTGAAGGTTTGCATGGATGGAGCTCCATATCTTCGTAAGATAGACTTGAAAATGTATGAAAGCTACCGAGAACTTTCCGATGCCTTGGCCAAGATGTTTAGCTCCTTCGCAATGGGTAAATGTTCTGGTACTCAAGGAATGATAGATTTCATGAACGAAAGAAAGTTGATGGATCTTCTCAATAGCTCAGAGTTCGTTCCAACTTACGAAGATAAAGACGGTGATTGGATGCTCGTCGGGGACGTTCCATGGGAGATGTTTGTCGATTCATGCAAGCGTTTGAGAATCATGAAAGGTTCTGAAGCCATCGGGTTAGCCCCAAGAGCTATGGAGAAATGCAAGAGGAGAAGCTAG 762 50.13 MEAVGRNMPNQFVSLKETELCLGLPGGGDPPPDLTLKASGKRGFSQTIDLKLNIQSNDDGGGDVRVGVGLNDDIKNIPTSVDGPKSLGSKDPAKPLVKAQAVGWPPVRSYRKNVMAQKNTSGEGTEKASGGAAVAFVKVCMDGAPYLRKIDLKMYESYRELSDALAKMFSSFAMGKCSGTQGMIDFMNERKLMDLLNSSEFVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKRRS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6855173 6856276 - Carg15874-RA Car08g00996 153570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00996 253 Pfam AUX/IAA family 18 244 IPR033389 -
Car08g00996 253 ProSiteProfiles PB1 domain profile. 134 235 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00996 K14484 IAA; auxin-responsive protein IAA - csv:101205299 388.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00996 Car14g01596 CCT
Car06g01165 Car08g00996 CCT
Car08g00996 Car14g01596 ECH
Car06g01165 Car08g00996 ECH
Car08g00996 Car17g00168 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00996 Car-Chr8:6855173 Car12g00810 Car-Chr12:7795032 2.89E-79 dispersed
Car06g00768 Car-Chr6:5820187 Car08g00996 Car-Chr8:6855173 4.21E-119 transposed
Car14g01596 Car-Chr14:12938729 Car08g00996 Car-Chr8:6855173 6.49E-104 wgd
Car17g00168 Car-Chr17:1037466 Car08g00996 Car-Chr8:6855173 2.92E-129 wgd
Car17g01146 Car-Chr17:8804134 Car08g00996 Car-Chr8:6855173 2.35E-28 wgd
Car19g00046 Car-Chr19:317447 Car08g00996 Car-Chr8:6855173 1.08E-23 wgd
Car02g01522 Car-Chr2:9808946 Car08g00996 Car-Chr8:6855173 2.85E-72 wgd
Car06g01165 Car-Chr6:8575369 Car08g00996 Car-Chr8:6855173 3.21E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g604 . Blo12g00354 . . Bpe04g00805 Bpe14g01226 . . Cmo08g01088 Cmo17g00186 Cma06g01344 Cma14g01774 Car06g01165 Car14g01596 . Cpe08g00306 . . . . . . . . Cla06g00625 Cam06g0664 Cec06g0668 Cco06g0674 Clacu06g0652 Cmu06g0645 Cre06g1413 . Cone3ag0696 . . Lsi05g01663 Csa02g01105 Chy05g00364 Cme06g00548 Blo02g00605 Blo07g00243 Bda11g00610 Bda13g00091 . Bpe13g00577 . . Sed02g1370 Cmo06g01355 Cmo14g01811 Cma08g01113 Cma17g00190 Car08g00996 Car17g00168 . . Bhi12g02259 Tan06g2466 Cmetu06g0764 . . . Lcy13g0327 Cla05g00490 Cam05g0534 Cec05g0546 Cco05g0546 Clacu05g0532 Cmu05g0504 Cre05g0572 Lsi09g01278 Csa03g01265 Chy06g00519 Cme05g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000184 9 5 7 6 9 5 10 5 6 6 4 5 11 6 6 10 5 9 3 5 6 6 6 6 6 6 6 7 6 3 190
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4007 PF02309 AUX_IAA 9.30E-79 CL0072 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00996 Car_Chr08 FPKM 7.400233 8.276909 8.575552 8.122747 6.942901 6.861043 7.1738 8.961167 8.970998 9.12626