Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01012 ATGGCGGAAGCAGAGACAGGATCAGCTACAGGCAGCAGTGGCGGAAGAGCGGAGGCGTCGCTGAAGGACAAGGGCAATGAGTTTTTCAAAGCAGGAAACTATCTCAAAGCGGCTGCACTTTACACTCAGGCTATCAAGCTAGACCCTTCGAATCATGCTCTTTATAGCAATCGTGCTGCTGCCTTTCTGCATCTAGTTAAGCTTAACAAAGCACTTGCCGACGCTGAGATGACAATTTCATTGAACCCACAATGGGAAAAGGGATATTTCAGAAAGGGATGCGTTTTGGAAGCCATGGAAAAATATGACGATGCATTGTCTGCATTTCAAGCCGCCTTACGGTACAATCCACAAAGTGCAGAAGTCTCAAGAAAGATCAAAAGGGTTTCACAGTTAGTGAAAGATAAAATGAGAGCCCAAGAGGTGGAGAACAAGAGATCAAATATAGATATGAAGAAGCACTTGGATAAGCTGAAATCTGAACTGTCTGACAAATATGGCTCGGAAGAAGGCTGCAAAGACGTATTTTCTTTTCTTGTTGAGACAATGGAGGCTGCTGTGAGATCATGGCATGAAACTTCCAATGTGGATGCTAAAGTGTACTATTTACTCGATAAGGAAAAGACGGATACCGAAAAATATGCTCCAATTGTTAACATTGATAAGTGTAACCATTATATACCAACCATTCCTGTTTTTTATGCAATGCAGGCATTTGAATCGCCTCACACGCATGGTGATTGTTTTCAGTTCTTAAGGAAATATGCCGAGGATTCAGTCGCCCGAGCAGCATGCTTAGTTGCTCCCAAAAGCTTGATATCTTACCCACAGGTCTGGAAAGGACAAGGTTCAAGAAAATGGAAGCATGGACAGCATGATGGTTTCTTTGTTCAGCTTGAAACTCCTTCCCTAAGAAAGCTATGGTTTGTTCCTAGTTCCAATGAACTGGGACGACCATTGTGCCGGGATCCTGAGGTTCTGGATATCGGTGCACATGAACTAATACCGCGCATATTTAAAGAAAAGCTGTCGAGCACTTAG 1041 43.42 MAEAETGSATGSSGGRAEASLKDKGNEFFKAGNYLKAAALYTQAIKLDPSNHALYSNRAAAFLHLVKLNKALADAEMTISLNPQWEKGYFRKGCVLEAMEKYDDALSAFQAALRYNPQSAEVSRKIKRVSQLVKDKMRAQEVENKRSNIDMKKHLDKLKSELSDKYGSEEGCKDVFSFLVETMEAAVRSWHETSNVDAKVYYLLDKEKTDTEKYAPIVNIDKCNHYIPTIPVFYAMQAFESPHTHGDCFQFLRKYAEDSVARAACLVAPKSLISYPQVWKGQGSRKWKHGQHDGFFVQLETPSLRKLWFVPSSNELGRPLCRDPEVLDIGAHELIPRIFKEKLSST 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6935400 6938787 - Carg15890-RA Car08g01012 153586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01012 346 Pfam Tetratricopeptide repeat 87 118 IPR013105 -
Car08g01012 346 Pfam TPR repeat 25 63 - -
Car08g01012 346 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Car08g01012 346 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01012 - - - csv:101202929 595.504
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01012 Car17g00193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01012 Car-Chr8:6935400 Car19g00837 Car-Chr19:8863046 5.63E-19 dispersed
Car06g00678 Car-Chr6:4038605 Car08g01012 Car-Chr8:6935400 7.84E-17 transposed
Car16g01004 Car-Chr16:8469742 Car08g01012 Car-Chr8:6935400 6.15E-17 transposed
Car17g00193 Car-Chr17:1159539 Car08g01012 Car-Chr8:6935400 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g544 Blo01g00117 . . Bda08g00245 . . . Bma05g01100 Cmo08g01105 Cmo17g00208 . . . . . . . . . . . . . . Cla06g00604 Cam06g0642 Cec06g0645 Cco06g0648 Clacu06g0629 Cmu06g0623 Cre06g1390 . . Cone7ag0272 Cone4ag0265 . Csa02g01134 Chy05g00391 . . . . . Bpe05g00892 . . . . . . Cma08g01131 Cma17g00217 Car08g01012 Car17g00193 Cpe12g00184 Cpe17g00158 . . . . . . . . . . . . . . Lsi09g01301 . . Cme05g00478
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007919 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01012 Car_Chr08 FPKM 5.957136 5.615409 2.965889 3.006258 4.134308 5.612016 4.642387 3.385868 2.499299 2.793118