Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01016 ATGAGTAATATTAAATCTAAATCAGTAATTTTCTTCAGCTATTGTGAATGCTTTGCTGCTGGTGTGTACTGCATTGATCCATGTTCATGTCAAGAGTGCTTCAACCAACCGATACATGAAGCCATGGTTCTCGAGACTCGTAGACAGATCGAGTCTCGCAATCCGCTTGCGTTTGCTCCTAAAGTGATCATGAACTCGGATTCTTTTTCTGAACTTGGGGATGATTCGAACAAGACTCCAGCTTCAGCGAGGCATAAACGAGGATGCAACTGTAAGAAGTCAAGTTGCTTGAAAAAATACTGTGAATGCTATCAGGGCGGTGTTGGGTGTTCCATCAACTGCAGATGTGAAGGTTGTAAAAACACATTTGGAAGAAAAGATGAATCAGCTGTAATAGAAACTGACACTAAACAAGAGGAAGAAGGAAGAGAACATTGCCTAAAAACTGCAGAAGTACAGAAAGATGAAGACCAGCAGAACCCAAACAGTGCTGTTCCCTCGACACCACTAGGACGATGCAGATCATTGATTCCACTTCCATTTCAACTGAAGAGGAAACTTCCATCTTTCATTGACGACGAATCCTCGTATCGATTGAGTGTTCGATTCAAACTCGAGAAGCAAGGCATCATTCAAACAGAGACCAAGTTTGAGAAAACCCCCAGTGCAGATGTGATGCCAGAAACCATCTGTAATGGTTGCTCTTCCAGCACAGGTGTTGTTAAGAGTGTTTCTCCCAACAGTAAGAGGATCACTTTACCTCCACCACAGGGCGACTTCCGGCCACTGCCATCGACTCGAATCGGCCGGAAATTGATACTGCAGTCCATACCCTCCTTCCCCTCTCTCACGAATCTAAACTCAAGAGTGAATGGAACCAGTGAACTGTGA 891 44.11 MSNIKSKSVIFFSYCECFAAGVYCIDPCSCQECFNQPIHEAMVLETRRQIESRNPLAFAPKVIMNSDSFSELGDDSNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNTFGRKDESAVIETDTKQEEEGREHCLKTAEVQKDEDQQNPNSAVPSTPLGRCRSLIPLPFQLKRKLPSFIDDESSYRLSVRFKLEKQGIIQTETKFEKTPSADVMPETICNGCSSSTGVVKSVSPNSKRITLPPPQGDFRPLPSTRIGRKLILQSIPSFPSLTNLNSRVNGTSEL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6950102 6952186 + Carg15894-RA Car08g01016 153590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01016 296 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 13 36 IPR005172 -
Car08g01016 296 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 86 122 IPR005172 -
Car08g01016 296 ProSiteProfiles CRC domain profile. 1 124 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01016 - - - bhj:120092727 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00334 Car-Chr5:1915958 Car08g01016 Car-Chr8:6950102 5.06E-07 dispersed
Car06g01197 Car-Chr6:8753983 Car08g01016 Car-Chr8:6950102 7.48E-85 dispersed
Car08g01016 Car-Chr8:6950102 Car14g01564 Car-Chr14:12796723 1.29E-48 dispersed
Car08g01016 Car-Chr8:6950102 Car17g00197 Car-Chr17:1181670 4.39E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car08g01016 . 14 284 CPP Transcription Factor Family AT3G22760 50.5 1.2e-62 238.0
Car05g00334 . 367 517 CPP Transcription Factor Family AT3G22760 52.0 4.1e-42 169.9
Car08g01016 . 14 283 CPP Transcription Factor Family AT3G22780 52.8 1.6e-71 268.1
Car05g00334 . 374 517 CPP Transcription Factor Family AT3G22780 52.8 4.2e-40 163.7
Car08g01016 . 14 284 CPP Transcription Factor Family AT4G14770 54.2 9.6e-71 265.4
Car05g01259 CCT,CST,ECH 90 519 CPP Transcription Factor Family AT2G20110 60.2 3.8e-137 485.7
Car12g01226 CCT,CST,ECH 90 487 CPP Transcription Factor Family AT2G20110 58.9 6.7e-126 448.4
Car11g00499 CCT,CST,ECH 89 538 CPP Transcription Factor Family AT2G20110 51.3 6.3e-116 415.2
Car10g00582 CCT,CST,ECH 6 424 CPP Transcription Factor Family AT2G20110 51.9 2.2e-108 390.2
Car08g01016 . 14 145 CPP Transcription Factor Family AT3G04850 59.1 2.0e-44 177.9
Car05g01259 CCT,CST,ECH 93 526 CPP Transcription Factor Family AT4G29000 61.8 1.7e-146 516.9
Car11g00499 CCT,CST,ECH 60 509 CPP Transcription Factor Family AT4G29000 56.2 3.1e-132 469.5
Car12g01226 CCT,CST,ECH 99 494 CPP Transcription Factor Family AT4G29000 57.3 6.5e-130 461.8
Car10g00582 CCT,CST,ECH 6 396 CPP Transcription Factor Family AT4G29000 58.5 1.4e-121 434.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010127 0 1 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4010 PF03638 TCR 4.50E-12 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01016 Car_Chr08 FPKM 7.177479 7.313269 5.059813 4.098659 1.988819 1.296108 2.640262 21.964569 24.466013 25.260569