Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01016 ATGAGTAATATTAAATCTAAATCAGTAATTTTCTTCAGCTATTGTGAATGCTTTGCTGCTGGTGTGTACTGCATTGATCCATGTTCATGTCAAGAGTGCTTCAACCAACCGATACATGAAGCCATGGTTCTCGAGACTCGTAGACAGATCGAGTCTCGCAATCCGCTTGCGTTTGCTCCTAAAGTGATCATGAACTCGGATTCTTTTTCTGAACTTGGGGATGATTCGAACAAGACTCCAGCTTCAGCGAGGCATAAACGAGGATGCAACTGTAAGAAGTCAAGTTGCTTGAAAAAATACTGTGAATGCTATCAGGGCGGTGTTGGGTGTTCCATCAACTGCAGATGTGAAGGTTGTAAAAACACATTTGGAAGAAAAGATGAATCAGCTGTAATAGAAACTGACACTAAACAAGAGGAAGAAGGAAGAGAACATTGCCTAAAAACTGCAGAAGTACAGAAAGATGAAGACCAGCAGAACCCAAACAGTGCTGTTCCCTCGACACCACTAGGACGATGCAGATCATTGATTCCACTTCCATTTCAACTGAAGAGGAAACTTCCATCTTTCATTGACGACGAATCCTCGTATCGATTGAGTGTTCGATTCAAACTCGAGAAGCAAGGCATCATTCAAACAGAGACCAAGTTTGAGAAAACCCCCAGTGCAGATGTGATGCCAGAAACCATCTGTAATGGTTGCTCTTCCAGCACAGGTGTTGTTAAGAGTGTTTCTCCCAACAGTAAGAGGATCACTTTACCTCCACCACAGGGCGACTTCCGGCCACTGCCATCGACTCGAATCGGCCGGAAATTGATACTGCAGTCCATACCCTCCTTCCCCTCTCTCACGAATCTAAACTCAAGAGTGAATGGAACCAGTGAACTGTGA 891 44.11 MSNIKSKSVIFFSYCECFAAGVYCIDPCSCQECFNQPIHEAMVLETRRQIESRNPLAFAPKVIMNSDSFSELGDDSNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNTFGRKDESAVIETDTKQEEEGREHCLKTAEVQKDEDQQNPNSAVPSTPLGRCRSLIPLPFQLKRKLPSFIDDESSYRLSVRFKLEKQGIIQTETKFEKTPSADVMPETICNGCSSSTGVVKSVSPNSKRITLPPPQGDFRPLPSTRIGRKLILQSIPSFPSLTNLNSRVNGTSEL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6950102 6952186 + Carg15894-RA Car08g01016 153590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01016 296 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 13 36 IPR005172 -
Car08g01016 296 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 86 122 IPR005172 -
Car08g01016 296 ProSiteProfiles CRC domain profile. 1 124 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00334 Car-Chr5:1915958 Car08g01016 Car-Chr8:6950102 5.06E-07 dispersed
Car06g01197 Car-Chr6:8753983 Car08g01016 Car-Chr8:6950102 7.48E-85 dispersed
Car08g01016 Car-Chr8:6950102 Car14g01564 Car-Chr14:12796723 1.29E-48 dispersed
Car08g01016 Car-Chr8:6950102 Car17g00197 Car-Chr17:1181670 4.39E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4010 PF03638 TCR 4.50E-12 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01016 - - bhj:120092727 498.049