Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01026 TTGGTGGTTTACGGTTTTGGTTTTGGAAAAATCTTGCGGAATTTGGATCTGTTTGCTTCAGATCTGATAGGTTTTTCATTGGGGGAGTTCGGGGGGTTCTTGCTTTGGGGGTTGATTCGCATGGAGGACGGTGTGAGATCTGGGGGACCATCGGGGGTTTTGGTGAAGACTCGGAACTCGTCCGGTTGCTTAATTGTTAGAAAGAAAGAGGATGGATTAGGGGGCGCCGGTTCTTCGGCCTCACGCTTGCTTCATGCGAAGAAGGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGTAGACGGGTTGATCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGATATGGACGAGAGGGGAAGCATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGTTCTGCTCAACAGGATGGATGTGGATGGTTTAGGAAGAAATATGGGCACCTTAGATGTCTTTGATTTCAACGAGTATGATGACCTCGACGGTGAGATTGAGCAGAGGAAGCACGTTAACGGCAGTGGAGAAAAGCGGTTTCTTGGTTCCATGAACCTGCCTCAACGTGAAATCAAGAGGGAATTTGGAACCACTTCTAGTAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCAGAAAAAACCAATACCTTTGATCGAGATAGGCCTACCAGAAAGATTAACTTCGACACAGATAGTGATGGAGCTTATGTCCCAACGCCCTTGTTAAGGGATAAGTTTAGGGGTCATTCTGATGAAGCAATAAGGGTTCAGGGTAAAAATGGAGTTTTAAAGGTCATGGTAAAAAAGAAGAAGAATGTGAGTGAAACTTCGGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGACTCTAAGGACTGAAGATACTCCGAAGAGGAAAGTGTTAGTTGCTCCTTCAGTTTACCCAGAAACTAAACCCCATGTGAAACAGAATCCCTTTCCTAAGCCAGAGAAGGACCATGCTGATTTTCAAACATCAGCATCAACAAAAAATGGAAGGGGTTGCAGTTGGGATTCAGGTGATAGCGGTGTATCATTGAAGCCCAGAAAAAAGGTCGTTGAAGCTCAGAAATCTACCAAGAGGGCAAGCTCTGAAGTTGAAAAAATTCCATGTGAAGAGACTCCCCCAAGTACAGCAAAGGAAGGAAAAGCAAAACGAGGCAGTGGAACTGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTTCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCAACTGGAACAGCATATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAATGAAGGAGCAGAGGCCAAACCCAGTGCTGATGCTTCCTTTACCCCAATATCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCAGAGAGATGAAAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACTGAGATCTGCTGGTACTAAAAATGACGTGGACAGCATGGATAGTGATAGCAACGAAGAAAAATTAAGCTCTTTCATAAAGCAGGGTGGGAAATCTATTAAAAAGAAATTGAACGAGAATGGATTTCCTAGTGTTGACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCACTGCAAAACCTTCTTCTGGATTCAGTTCACGTATTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTCGCTCTAGTAAGGGATTAGATTCAGAGAATGATGGTTTTGTTCCATATACTGGTAAAAGGACTCTGCTGTCCTGGCTTATCGATTCTGGGACTGTGCAGTTGAGCCAAAAGGTTCGTTATATGAACCGCAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGTGGTTGCTGCAGCAAAATCCTCACTGTTTCGAAGTTTGAGATACACGCTGGAAGCAAACTACGGCAACCTTTTCAAAACATCTTTCTGGAATCTGGGATTTCTCTTCTGCAATGCCAGATAGATGCTTGGAACAGACAGGAGGAATCTAAACGTCTCAGTTTCCACACAGTTGAAATTGAAGGCGATGATCCGAATGATGATACTTGTGGCATCTGTGGAGATGGTGGCGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGACATTCAGATTCCTCCGGGTGATTGGCACTGCCCAAATTGTACATGCAAGTACTGTGGAGTTGCTAGTGTTGATACTTCTCATGAAAACACTACCAATGTTCTTGAGATATCTAGTTGCATGTTATGTGAGAAAAAATTTCATGAATCGTGCATCCCAGAGATGGATACTCATTTCAATGGTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTCGAGAATTTGCAGAAGTTTCTTGGGGTGAAACACGAGTTAGATGCAGGGTTCTCATGGTCTCTTGTCCGTAGAACAAGTGAAGATTCAGATTCATCTCTTCGTGGGCATTCACAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGTTTTTTGTCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTACAATATTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACGAAGTTAGCTGAGATGCCATTCATTGGAACCCGTCATATATATAGACGTCAAGGAATGTGCCGTCGTCTTTTTTGTGCAATTGAATCTGCTCTTCGCATGCTTAAGGTTGAAAAACTGATTATACCAGCAATTGCCGAGCTCATGCATACATGGAATGTTATTTTTGGCTTTATCCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGTTGTTAATCGAAGAGACAATTGTTGAGGAAAATGCTACTGCTGCCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTCAGTAGTCCTAAGATGGATGCAGAGACCTCATCTGGACAGGAACCTCAAAGTTGTGATGACACTGAACAGCGGCACTCCAAGAAAACAACAAATGAAGCAGCTGACACTAACCCGGATCCTGAATCCATGCCTGGTTCTCCAAATGATACATCTGTGGTGAATAGTTCTCTGGACGCATCTCGTGAAGTTAAAACTTCTTGCTTTCCAATGGAAACTGAAAATTCAGATTCTGATTCTGGTGATAAATTAGCTGAATGTTCCCCCGATGGGAAATGTTCATCTCCCTCCGACCGAATGGGCATCTCTCTTCCAACCAAAAATAGGCCTGGAATTCAGCATGTTTCAGAAGACCATTCGCAGTCCACTTCTCAATGTATGGCAGCTGATACTCCTTCAGACAGTTTGCTTGAACCTAAGGTTACAGTTTCAGATGAAGGAATCAGACGTTCGAATTCTCATGCTGGGCACAAGTTGGTTGAATCTGATTCTCAGAAGAAATCTTTCCCTTCTACTTTAGACCATGGCACTGATGAGTTTGAAAACAACATACCCGTGATGGATTCTCCTGAATATGACAAGTGTTTGAATAAGATTAATGGTCATGATTTTCGTGAAGACAATGCCCATGCTATTTCTTTTAAACCTGCTCATTGGGATGAAAATTTTGCTAATGGCGTTGTCGGTGAAAAGCCACTTGCCTCTTCATCTGGTCTGTGTGGCTCTAATGGACGCCCCTCCGAAACTATATCCGATGATGGAATTTGTGGCAGTGAAAATTCTCCACAGACCTGTGGGGAAAAAGTCAGGTGA 4017 42.35 LVVYGFGFGKILRNLDLFASDLIGFSLGEFGGFLLWGLIRMEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSASRLLHAKKEKKRPRLVLSDSGSSDEVLLPHRRRVDPETIRVCNGLNSFEKDDMDERGSIRKKDRLQYVKRNDDVLLNRMDVDGLGRNMGTLDVFDFNEYDDLDGEIEQRKHVNGSGEKRFLGSMNLPQREIKREFGTTSSRHALVDKRKNLYAEKTNTFDRDRPTRKINFDTDSDGAYVPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVKKKKNVSETSDMYDHRKLEESRKTLRTEDTPKRKVLVAPSVYPETKPHVKQNPFPKPEKDHADFQTSASTKNGRGCSWDSGDSGVSLKPRKKVVEAQKSTKRASSEVEKIPCEETPPSTAKEGKAKRGSGTEKQKLRERIRGMLLSSGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEGAEAKPSADASFTPISDDILSQLTRKTRKKIEKEWKSKQRDESDSENAKEASALRSAGTKNDVDSMDSDSNEEKLSSFIKQGGKSIKKKLNENGFPSVDSKGQSSSKYSRDATAKPSSGFSSRILHGRKGRKLGLLVRRSSKGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGISLLQCQIDAWNRQEESKRLSFHTVEIEGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDTSHENTTNVLEISSCMLCEKKFHESCIPEMDTHFNGSVTSFCGKNCRELFENLQKFLGVKHELDAGFSWSLVRRTSEDSDSSLRGHSQRIECNSKLAVALTVMDECFLSIVDRRSGINLIHNVLYNIGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRMLKVEKLIIPAIAELMHTWNVIFGFIPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEETIVEENATAASGAKQTDCRSTEFSSPKMDAETSSGQEPQSCDDTEQRHSKKTTNEAADTNPDPESMPGSPNDTSVVNSSLDASREVKTSCFPMETENSDSDSGDKLAECSPDGKCSSPSDRMGISLPTKNRPGIQHVSEDHSQSTSQCMAADTPSDSLLEPKVTVSDEGIRRSNSHAGHKLVESDSQKKSFPSTLDHGTDEFENNIPVMDSPEYDKCLNKINGHDFREDNAHAISFKPAHWDENFANGVVGEKPLASSSGLCGSNGRPSETISDDGICGSENSPQTCGEKVR 1338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6999023 7005602 - Carg15905-RA Car08g01026 153600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01026 1338 MobiDBLite consensus disorder prediction 1304 1338 - -
Car08g01026 1338 Pfam Tify domain binding domain 669 719 IPR032308 -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1054 1257 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 510 556 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 374 398 - -
Car08g01026 1338 ProSiteProfiles Zinc finger PHD-type profile. 744 788 IPR019787 -
Car08g01026 1338 MobiDBLite consensus disorder prediction 296 424 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 408 424 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 529 543 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 340 354 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1087 1103 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 568 603 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1302 1338 - -
Car08g01026 1338 ProSitePatterns Zinc finger PHD-type signature. 747 785 IPR019786 -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1104 1143 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1183 1199 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 575 599 - -
Car08g01026 1338 Pfam PHD-finger 747 788 IPR019787 -
Car08g01026 1338 MobiDBLite consensus disorder prediction 296 322 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1054 1086 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 1211 1232 - -
Car08g01026 1338 MobiDBLite consensus disorder prediction 510 528 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01026 - - - csv:101210263 2020.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01026 Car17g00215 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01063 Car-Chr1:9977819 Car08g01026 Car-Chr8:6999023 2.60E-10 dispersed
Car08g00305 Car-Chr8:1951819 Car08g01026 Car-Chr8:6999023 0 dispersed
Car08g01026 Car-Chr8:6999023 Car09g00728 Car-Chr9:4321540 4.27E-121 dispersed
Car20g00471 Car-Chr20:2608235 Car08g01026 Car-Chr8:6999023 2.91E-48 dispersed
Car17g00215 Car-Chr17:1299510 Car08g01026 Car-Chr8:6999023 0 wgd
Car17g01118 Car-Chr17:8620894 Car08g01026 Car-Chr8:6999023 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4011 PF16135 TDBD 4.90E-22 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01026 Car_Chr08 FPKM 8.578842 8.472916 0.782327 0.890099 1.713444 1.250314 1.742887 0.451791 0.534291 0.602874