Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01057 ATGGATTGTGCCAATGAGCTAAGCAGTATTAACAAGACAAGAGAAGGATTATGTGCATTCCTGAAAGCACTAATTTTGACCTCAGCTGTTGTTTCTTCCTTAACTGGGTACACATTCTGGGCCTCAAAGAAGGGCAAAGATTTCAGCTATCTTGGACCGTTTTTGTTTACCGCACTAATGATCCTCCTCCTCACTAGCTTCATTCAGGCATTCTTCCCTCTGGGTCCTACTTCCACAGCAGTTTACGGTGGAATTGGTGCGATAATTTTCTCGGGTTACATTATATATGATACGGACAATCTGATCAAGCGTTTTACATATGATGATTACATATGGGCTGCAGTCACTCTGTATCTAGATATCCTGAACTTGTTCCTGACCATTTTGCGGATGCTGAGACAGGGAGACAACTAG 414 42.51 MDCANELSSINKTREGLCAFLKALILTSAVVSSLTGYTFWASKKGKDFSYLGPFLFTALMILLLTSFIQAFFPLGPTSTAVYGGIGAIIFSGYIIYDTDNLIKRFTYDDYIWAAVTLYLDILNLFLTILRMLRQGDN 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7231408 7232676 + Carg15936-RA Car08g01057 153631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01057 137 Pfam Inhibitor of apoptosis-promoting Bax1 21 132 IPR006214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01057 K24205 TMBIM, LFG; protein lifeguard - csv:101211383 232.261
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01057 Car17g00256 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01057 Car-Chr8:7231408 Car19g00020 Car-Chr19:143279 1.72E-51 dispersed
Car17g00256 Car-Chr17:1590616 Car08g01057 Car-Chr8:7231408 9.62E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g408 . . Bda03g00908 . Bpe04g00852 Bpe14g01165 Bma04g00803 . Cmo08g01152 Cmo17g00268 . . . . . . . . . . . . . . Cla06g00533 Cam06g0575 Cec06g0572 Cco06g0580 Clacu06g0562 Cmu06g0556 Cre06g1324 . . Cone7ag0201 Cone4ag0194 . . Chy11g01442 . . Blo07g00199 . . . . . . . . . Cma08g01181 Cma17g00281 Car08g01057 Car17g00256 Cpe12g00234 Cpe17g00115 Bhi12g01782 . . . . . . . . . . . . . Lsi09g01371 . . Cme11g01947
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010013 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01057 Car_Chr08 FPKM 0.054812 0.0 0.117524 0.0 0.272351 0.144203 0.111227 0.091024 0.03857 0.157821