Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01069 ATGACACAAAGGCCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAATTGGGGAGTGCAATCAAGCATGGAGGTGGGATTGATGCAGAGACAATGGGTTGAGTACACAAAGTCGCTATTCATGGAGGGTTTCTTGGACAGTCAGTTTATAGAGCTGCAGAAACTGCAAGATGAGGGCAACCCAGATTTCATTGTTGAAGTGGTCTCTCTTTTCTTTGAGGATTCTGAAAGGCTTCTCAATGATCTAACCAGAGCTTTAGAAGAGCCTGATGTGGACTTTCAAAAGGTTGATGGCCATGTTCACCAGCTTAAAGGAAGCAGTTCTAGCATAGGTGCACAGAGAGTTAAAAATGTCTGTATTACCCTCCGCAGCTTCTGCGAGGAACAGAACATTGAAGGGTGCCTGAGATATCTGCAACAACTAAAGCAAGAGACCTGCCTGGTGAAAAACAAATGGAGCAACAAATCATGGCTGCTGGTGGGTCAATCCCTACAACAGAATTGCTATTCTAAGTCGGCTGATATTCACAAAAGGCTAGAGAATACTTCTGGAGTACTTGTTATTAGAGTTGATGGGAATGTTGTTTTTCTTTTCGTTTTCTCGGAGGTCCTTGCGAAATTACTGTTCTTCTATTTGATGAGACCTAAAAAGCTCTACCAATCGTGTCTGAGTGCAGCTATTCCGCATGGATTACACATTCGGGAGAGGGCTTTTATGGCTAGTTTTAAGGTCAACTACATTATCCCAATAGAGAACATAAATACTAGATATGAGACTATAATCTGTAACATGAAAGAAAGAAAGGATGCATTTTGCTGCCCCTCTTTGAAGACAGATTTCGATAATTTATCTGGAAGAAGGATCTTTCTTATGGAAGATTGTGACATGCCTCTCAAGAGGGAGGGTGAAATTCTTGGACGGGTGAAAATTTCAATGGATATTTGTAAAGAATTGTCAGACGGCAACTCGGTGACAGAAATACTTGATGATTTATGTGGGAATTTAAGAATTGTCAATGGACTTATATAA 1041 41.31 MTQRPRERERERERERERGNWGVQSSMEVGLMQRQWVEYTKSLFMEGFLDSQFIELQKLQDEGNPDFIVEVVSLFFEDSERLLNDLTRALEEPDVDFQKVDGHVHQLKGSSSSIGAQRVKNVCITLRSFCEEQNIEGCLRYLQQLKQETCLVKNKWSNKSWLLVGQSLQQNCYSKSADIHKRLENTSGVLVIRVDGNVVFLFVFSEVLAKLLFFYLMRPKKLYQSCLSAAIPHGLHIRERAFMASFKVNYIIPIENINTRYETIICNMKERKDAFCCPSLKTDFDNLSGRRIFLMEDCDMPLKREGEILGRVKISMDICKELSDGNSVTEILDDLCGNLRIVNGLI 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7292726 7295211 + Carg15948-RA Car08g01069 153643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01069 346 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 64 156 IPR008207 GO:0000160
Car08g01069 346 Pfam Hpt domain 70 147 IPR008207 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01069 K14490 AHP; histidine-containing phosphotransfer peotein - csv:101216841 244.202
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01254 Car08g01069 CCT
Car08g01069 Car14g01488 CCT
Car06g01254 Car08g01069 ECH
Car08g01069 Car14g01488 ECH
Car08g01069 Car17g00269 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01069 Car-Chr8:7292726 Car14g01143 Car-Chr14:10070380 3.81E-34 dispersed
Car14g01488 Car-Chr14:12355236 Car08g01069 Car-Chr8:7292726 9.45E-32 wgd
Car17g00269 Car-Chr17:1657585 Car08g01069 Car-Chr8:7292726 3.94E-83 wgd
Car06g01254 Car-Chr6:9018981 Car08g01069 Car-Chr8:7292726 3.83E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0036992 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01069 Car_Chr08 FPKM 34.851963 36.758724 49.753674 48.383453 30.980629 30.745657 32.538521 106.362282 114.992142 124.54847