Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g01080 | ATGTCTCTCAAGAGCATCATTCAAGATATGAGGTCCCGCTCCCGCCGTGTGGTGCAGGACGGCACGGCGCCGGAGCCAACGGACGGCCTCGTCCAGAGCTGCTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTTATGAGAATCGAGGCATCGGAGACTTCTTGGCCACGGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTATGCCGGAGCTGGCGTGCCATCACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAAGTTAACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACTAATGCACTAAATGACGATGGTAAGTTTCTTCTTGCTGCTCGGAAATGCAAGCGACCGACCTACACAGACTATATTATCTCTTTACACGCCGAGGATTTGTCGAAAGGGAGCAGCACCTATGTCGGGAAGTTGAGATCTAATTTCCTAGGAACTAAGTTCACAATCTTCGACGGGCAACCGCCACATTCGGGAGCGAAGATCACAAAAAGTCGCTCCACGAGGCTTGTGAATTTGAAACAAGTTTCGCCCAAATTCCCTGCTGGGAACTATCCAGTTGCTCACATTTCGTATGAACTAAATGTATTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCTGCTGTTGAACCTGGAGGAGTGGCTCCGACACCCACCGAGCTCTCGTTGAGCAATGTGGAACTGTTTCCATCGTTCCCGTTCTTAAGGTCGAAATCAAATGCAGATAGCTTGCTTTCTGAACCATTAGCTAGTCAGAAAGATGAAATGCTGGCGCTGAGAAACAAGACTCCCAGGTGGCACGAGCAGCTTCAATGCTGGTGTTTGAATTTTCATGGACGAGTTACGATTGCTTCCGTGAAAAATTTTCAACTCGTCGCTTCTTCGGAAACCGAACCTCCTTCACAAGAACAAGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTGTTCACCATGGATTTTCGTTACCCGATCTCGACTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA | 1161 | 49.1 | MSLKSIIQDMRSRSRRVVQDGTAPEPTDGLVQSCWANMPQELLREVLMRIEASETSWPRRKSVVACAGVCRSWRAITKEIVKTPEVSGKLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKFPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVEPGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLASQKDEMLALRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSETEPPSQEQEKIILQFGKVGKDLFTMDFRYPISTFQAFAICLSSFDTKIACE | 386 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 7360312 | 7363073 | + | Carg15959-RA | Car08g01080 | 153654 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g01080 | 386 | Pfam | F-box domain | 35 | 82 | IPR001810 | GO:0005515 | |
| Car08g01080 | 386 | ProSitePatterns | Tub family signature 2. | 371 | 386 | IPR018066 | - | |
| Car08g01080 | 386 | ProSitePatterns | Tub family signature 1. | 316 | 329 | IPR018066 | - | |
| Car08g01080 | 386 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Car08g01080 | 386 | Pfam | Tub family | 97 | 381 | IPR000007 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car08g01080 | Car14g01476 | CCT | |
| Car06g01262 | Car08g01080 | CCT | |
| Car08g01080 | Car14g01476 | ECH | |
| Car06g01262 | Car08g01080 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00544 | Car-Chr4:3059573 | Car08g01080 | Car-Chr8:7360312 | 1.65E-135 | dispersed | |
| Car08g01080 | Car-Chr8:7360312 | Car16g00653 | Car-Chr16:4150748 | 4.13E-152 | dispersed | |
| Car16g00401 | Car-Chr16:2475846 | Car08g01080 | Car-Chr8:7360312 | 2.32E-129 | dispersed | |
| Car14g01476 | Car-Chr14:12260396 | Car08g01080 | Car-Chr8:7360312 | 0 | wgd | |
| Car17g00282 | Car-Chr17:1737428 | Car08g01080 | Car-Chr8:7360312 | 9.09E-45 | wgd | |
| Car06g01262 | Car-Chr6:9073124 | Car08g01080 | Car-Chr8:7360312 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4014 | PF01167 | Tub | 4.80E-110 | CL0395 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g01080 | K19600 | - | csv:101203437 | 715.687 |