Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01083 ATGGCGAAACCCTCGAAACGACAGGTGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAGGAGGACGAGGAGGAGCTCGAAGCGGTAGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGAGGATTCAGATAACGATGCATCACCTGTCGAAAATGGGGAGGAAGAGGACGGAAGTAACGACGGGGATGATGATAAAGTCGATATTAGCAGGCGTGAAAAGGCCAGACTAAAAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTGGATGCACAAAATGCTGCAATTGATGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGAGCATTCTTCTTCCCAAAAGAAAACGAAAGGAAGGGGTCGTCATGCATCAAAGATAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTTTATCTGGGACTGGGAACACTCGTCTCCTTACACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGGTTAAATTGGCTCATTCGACTGTATGAGAATGGCATCAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACACTACAAACCATCTCTCTGTTGGGCTATCTTCACGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACCCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTATCTTGCGAGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGAATATACGGGAAAATTTACTGGTAGCTGGGAAGTTTGATGTCTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACGCCACTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTCGATGAATGGTTTCAAATTTCTGGGGAGAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTCCTTCGACCTTTTCTTCTTCGGAGGCTGAAATCGGATGTTGAAAAAGGTTTACCACCAAAAAAGGAAACAATACTTAAAGTAGGCATGTCACAGATGCAAAAGCAATACTATCGTGCTTTGCTCCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTCCGGAAATGCTGTAACCACCCATATTTATTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACTGGAGATCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGACTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTACTACTGTCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCTTTCAACAAGCCAGGAAGTGAAAAATTTGTTTTCTTACTTTCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTCATTCTTTACGACAGTGACTGGAATCCTCAAGTTGATCTGCAAGCCCAAGATCGTGCTCATAGAATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTTATTGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCCGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGATAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAGATGGATGAAAGTGGGGAGCTTCCTGACATGAACTGTCTAGTTTCTTTCTGTTTGATAATTTTCTGTTTTCTTTCTAATATTCAAGTAGTTTTGTCTAATGCTTATGTGGTTTTGGCAGCTGCTGAATTGTATGATTTCGACGATGAGAAGGATGAAAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCGGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAATTTTTCAACACACAAAGGTTGAGTGAACTATATGAAAAAGAAGTGCGGTATCTCATGCTAACACATCAAAAGAATCAGTTGAAAGATACAATAGATGTTGAGGAGACTGAAGTATGGCTAATCTTAGAAATGATAATTTTAGATGTGGGCGATCCATTGACGGCCGAAGAGCTGGAAGAAAAAGAAAAACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAAACGATATTAAAAGTATTGCTTTGGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAATGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCTCGTAAGGATGAAATAATGAAAGCCATCGGCAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGTCAGAATAAAGGGAAGTTGTACAACGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGGAACTGGGACGAACTGAAAGCAGCATTTCGTACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACAACACAAGAACTTGCAAGGAGGTGCGATACCTTAATCCGGTTAGTCGAGAAGGAAAACCAGGAATATGATGAACGGGAAAGACAGGCCCGTAAAGAAAAGAAGCTTGCCAAGAGTATGACGCCATCGAAACGTGCCTTGGCTAGGCAGTCCGAGAGCCCAACTAACCTAAAGAAGCGGAAGCAATTATCTAAGGATGAATATGTGAACTCTGGTAAGAGGAGGAAGTGA 3360 41.76 MAKPSKRQVSSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEEDGSNDGDDDKVDISRREKARLKEMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKITEEEEDEEYLKEEEDGLSGTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPDERRNIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDESGELPDMNCLVSFCLIIFCFLSNIQVVLSNAYVVLAAAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMLTHQKNQLKDTIDVEETEVWLILEMIILDVGDPLTAEELEEKEKLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIALEMEGKTEEEVERYANVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQSESPTNLKKRKQLSKDEYVNSGKRRK 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7375046 7382977 + Carg15962-RA Car08g01083 153657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01083 1119 MobiDBLite consensus disorder prediction 80 96 - -
Car08g01083 1119 Coils Coil 93 113 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 142 186 - -
Car08g01083 1119 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Car08g01083 1119 ProSiteProfiles SANT domain profile. 894 946 IPR017884 -
Car08g01083 1119 Pfam SLIDE 952 1062 IPR015195 GO:0003677|GO:0005634|GO:0006338
Car08g01083 1119 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Car08g01083 1119 MobiDBLite consensus disorder prediction 1066 1119 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 9 26 - -
Car08g01083 1119 Coils Coil 1052 1079 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 1097 1119 - -
Car08g01083 1119 Pfam HAND 798 895 IPR015194 GO:0003677|GO:0006338|GO:0031491
Car08g01083 1119 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Car08g01083 1119 MobiDBLite consensus disorder prediction 1 96 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 1066 1083 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 27 42 - -
Car08g01083 1119 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Car08g01083 1119 Coils Coil 22 42 - -
Car08g01083 1119 MobiDBLite consensus disorder prediction 53 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01083 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1949.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01056 Car-Chr2:7336214 Car08g01083 Car-Chr8:7375046 3.22E-139 dispersed
Car04g00724 Car-Chr4:4194184 Car08g01083 Car-Chr8:7375046 9.58E-63 dispersed
Car08g00131 Car-Chr8:786907 Car08g01083 Car-Chr8:7375046 1.76E-93 dispersed
Car08g01083 Car-Chr8:7375046 Car20g00085 Car-Chr20:443733 5.91E-148 dispersed
Car08g01083 Car-Chr8:7375046 Car17g00229 Car-Chr17:1408978 5.97E-161 transposed
Car08g01083 Car-Chr8:7375046 Car08g01037 Car-Chr8:7091424 6.16E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4015 PF00176 SNF2_N 1.00E-71 CL0023 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01083 Car_Chr08 FPKM 4.177543 3.476638 0.521626 0.718467 0.261246 0.0 0.167481 0.0 0.0 0.0