Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01091 ATGTTGAAACGAAGTCTTCCTTTTGCCCTCAACGAACGGCCGCCTTTGCAAACCATTGAAAATCTCAGTCACCATCTTCGAAGCTGCAAGGATTTGATATCTTCAACCTCCATTCACTCCATAGCCCTTAAGCTTGGATTCTTAAACCAAACTCTCACCGCCAACCATCTCATCAATTGCTATGTCAGATTCCGTAGAGTTGCAATTGCACACCAATTGTTCGACGAAATGCCTACCCGAAATGTTGTCTCATGGACCTCGCTTATGGCAGGATACGTCGACGATGGTCAACCGAGTATCGCTCTATCGCTGTTCGGGGCAATGTCGAGAACCTCGGTTGTGCCCAACGACTTCACTTTCGCAACCGCAATCAAGGCCTGTTCGATCCTGTCGAATTTAAGAGATGGTGAAAAATTCCATGCCTGTATGGAGATTTTTGGCTATGGAGGAAACGTTGTGGTGTGTTCTTCGCTTATTGATATGTATGGGAAGTGTAACGATGTTATTCGAGCCAGGAGAGTATTCGATTCCATGTCTTGCAAGAACATTGTTTCTTGGACTTCAATGATCGCTGCTTATGCTCAGAACGCACATGGCGACGATGCGTTAAAACTATTTAGGGAGTTCGGTAGCTCGAGTTGGGAACGTCCAAATCACTTCATGTTGGCTAGTGTGATTAGTGCTTGTGCATGCTTGGGCAGGTTGGTTTCGGGAAAAGTCGTGCATAGTGCAGCGATTCGTCTTGGCTGTGATTCGAACGATGTCGTTGCTAGCGTGTTGGTTGATATGTATGCTAAATGTGGGAGTCTCGAGTATTCTGATAGGGTCTTCAAAAGAATTTTAAACCCTTGTGTTATTTCTTATACTTCAATGATTGTGAGCACAGCAAAGTATGGACTTGGGAGACAGTCCCTTGAACTCTTTGAAGAAATGGTGAGAAAAGGGTTGAAGCCTAACCATGTCACTTTTGTTGGTGTCTTGCATGCTTGTAGCCATTCAGGACTTCCTGATGAGGGCCTTCACTATTTGACTTCCATGTATGAGAAACATGGGATAATGCCTGAGACTAAGCATTATACGTGTGTCGTCGACATGCTAGCTCGAGCAGGCGAGTTAGATAAAGCATACCAGCTAGCAAAATCCATGAAGGCAATGCCTGACGATGACCAGGCGCTGTTGTGGGGAGCGTTACTTTCGACTAGTAGGCTTCATGGGAGGGTAGATATTGCAGCGGAAGCCTGTCAGCGACTGGTTGATGCCAATAGACAAGTCGCGGGTGCATACGTCACTTTGTCGAATGCGTATGCATCGGCTGGGGATATGGAGAAGGCTCAGAGACTTCGAGTTGAGATGAAGCATAGTGGTGTCTATAAAGAACCGGGCTGCAGTTGGGTAGAGATAAAAGATTCGAGTTACGTATTCTATGCTGGGGATGTTATGTCGTGCCCACGAGGCGACGAAGTGTTGCGTTTACTTCGCGAGTTGGAACGGAAAATGAAGGACCGAGGCTATTCGAGAGGGAGCAAGGGATTGGTGTTTGTTGATATTGAAGAGGAGGCAGAGGAAGAGAAGGTTTGGTTGCACAGCGAGAGATTGGCATTGGGGTTTTGTTTGATTAGCATTCCTGAAGGACTGACCATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCACGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGACTTTGTAGTTAGAGATATCAACAGATTTCATCATTTCAAAACTGGGTATTGTACTTGCAATGATTTCTGGTAA 1791 45.45 MLKRSLPFALNERPPLQTIENLSHHLRSCKDLISSTSIHSIALKLGFLNQTLTANHLINCYVRFRRVAIAHQLFDEMPTRNVVSWTSLMAGYVDDGQPSIALSLFGAMSRTSVVPNDFTFATAIKACSILSNLRDGEKFHACMEIFGYGGNVVVCSSLIDMYGKCNDVIRARRVFDSMSCKNIVSWTSMIAAYAQNAHGDDALKLFREFGSSSWERPNHFMLASVISACACLGRLVSGKVVHSAAIRLGCDSNDVVASVLVDMYAKCGSLEYSDRVFKRILNPCVISYTSMIVSTAKYGLGRQSLELFEEMVRKGLKPNHVTFVGVLHACSHSGLPDEGLHYLTSMYEKHGIMPETKHYTCVVDMLARAGELDKAYQLAKSMKAMPDDDQALLWGALLSTSRLHGRVDIAAEACQRLVDANRQVAGAYVTLSNAYASAGDMEKAQRLRVEMKHSGVYKEPGCSWVEIKDSSYVFYAGDVMSCPRGDEVLRLLRELERKMKDRGYSRGSKGLVFVDIEEEAEEEKVWLHSERLALGFCLISIPEGLTIRIMKNLRMCSDCHEAFKLISEIVERDFVVRDINRFHHFKTGYCTCNDFW 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7433934 7435724 - Carg18832-RA Car08g01091 153665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01091 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Car08g01091 596 Pfam E motif 405 466 IPR046848 -
Car08g01091 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Car08g01091 596 Pfam PPR repeat family 283 331 IPR002885 -
Car08g01091 596 Pfam PPR repeat family 80 127 IPR002885 -
Car08g01091 596 Pfam DYW family of nucleic acid deaminases 511 596 IPR032867 GO:0008270
Car08g01091 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Car08g01091 596 Pfam PPR repeat 184 208 IPR002885 -
Car08g01091 596 Pfam PPR repeat 153 183 IPR002885 -
Car08g01091 596 Pfam PPR repeat 358 383 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01091 - - - csv:101222645 992.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01091 Car-Chr8:7433934 Car13g00244 Car-Chr13:4441499 2.39E-17 dispersed
Car08g01091 Car-Chr8:7433934 Car03g00712 Car-Chr3:6196617 7.84E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01091 Car_Chr08 FPKM 17.294777 17.172367 13.256755 13.921798 9.32799 8.141258 8.301253 17.817976 17.062925 16.510071