Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01122 ATGGTGGCCAAGAGCCAGCAAAACAGTAAACCCAAAGACAGGAAGCAAATTTCAGGCAACAAGAGTTCCTCGCATGGTTCCGCTTCGAAGAAACAGAAGTTCGTAAATGACAAGCCCTCGAAGTCCCATGGCCTGGGAACTGTTGGTAAACCCTTTAAATCGAAGGTTGAAAAATCAGAAGCTAAAAAGGAGCCAATTACGAAGCGAGAACATCGCCTCCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGACATTATGATTTGGAACATGAGCTCGCACATCTATGGGAGAAAATGAGGGTTCGAAATATCACCAAAGAAGATAGATCCAAATGGGTAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCATGTGTCGTCTCGTGTGCTTCAGACTTGTGTTAAACACTGCACAGATGCCGAGAGAGAGGCAGTGTTTGAGGAACTTAAGCCTCATTTTCTCACTCTTGCTTGCAACACGTACGCAGTTCATCTAGTGAAGAAAATGTTAGATAATGCCTCGAAAAAGCAGCTGGCTGGGTTTATCTCCTCTCTACATGGCCATGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACACGCATACCATTTAGCGAATGCAGCTCAGAAACAAACACTTCTATTGGAACTTTATTCGGTGGAACTCCAGCTATTTAAGGATCTCGTCTCGATGAAAGAAAGCAGGCCCTCTCACCAGAATTATGTTATATGCAGGCTAGTGGATGTAATTTCAAAATTGGACATTAAAAAAGCTTCGGTCTCACGACACATGACGTCAGTAATTCAACCTATTTTGGAAAAGGGGATAGTTGACCACTCTATTATACATAGGGTTCTGATGGAATACTTTACCATTGCTGATAAGACATCTGCCGCAGATGTAATCCAACATTTGTCCAGTTCACTTCTTGTTCGAATGATTCACACTAAAGATGGATCGAGGATCGGTGTACTTTGCATAAAACATGGGAGTGCAAAGGAAAGAAAGAAAATCGTCAAGGGAATGAAAGGCCATGTGAAGAAGATAGCACACGAACAATATGCGGTTATGTTATATTTATTTTATCTGATTGTAAATCCACCAATATCATATTATGGGGTTCTTGTATCCATTATCTCGGTTGTCGACGATACAAAGCTGATTAGGAAGATTATTATTAATGAGCTCGAGAAAGATTTGAAGGAGCTTATTTTGGATAAGAATGGAAGACGTGTAGTACTGCAACTACTGCGTCCCAATTGTTCGCGCTACTTCAGTCCCGACGATCTTGCTTCTTTAAATTTATCGATACCTTCTCTTTGCAACAAGACTATGCCTTCTTCTCAGTCCGAGTCGGGAGTCGATAGAGCAGAAGAGAAGGCTGATAGTGACATGGGCGAAACGGAAGGTGAGGAGGTTGATGGAGGTGAGGTTTCTGCCGAGGGCTCTGAAGCTGTAGAGGGTGGTAAAAAAGATCCTCTTATCCGAAGACATGAGTTGTTGGTGGATAGCGGGCTTGCCGAGAAGCTTGTCGATGTATGCGTCAACAATGCTGGGGAAATACTAAGGTCAAATTTCGGCCGAGAAGTAATGTACGAGGTTGCGACAGGGGGTGCCGATGGCATTCTTCAATCGAAATTGGGAGAAAAGCTGAGTGGTTTGTATGAAGCTATAGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCGCAGGAGATGAGCATGTCCTTGAAAATTTCCACTCTAGTAGGACTATAAGAAAGCTAATCTTGGACTGCCCTGCCTTTGCCCTCACTTTGTGGACCACAGCACTTGAAGGGAAATCCAAATTGTGGGCTCAAGGTCACAGTTGTAAGATAGTCCAAGCTTTCCTGGAATCCACGGACTCAAAGGTACGTGAAATTTCAAGAGTAGAGTTACAGTCCTTGATTGACGAAGGGTTACTCAAAATCCCAGACACCAAGCAGTCTGCCGACAAAAGCTGA 2034 43.51 MVAKSQQNSKPKDRKQISGNKSSSHGSASKKQKFVNDKPSKSHGLGTVGKPFKSKVEKSEAKKEPITKREHRLQAKELAEARKKKRKRHYDLEHELAHLWEKMRVRNITKEDRSKWVSKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAEREAVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAGFISSLHGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLLELYSVELQLFKDLVSMKESRPSHQNYVICRLVDVISKLDIKKASVSRHMTSVIQPILEKGIVDHSIIHRVLMEYFTIADKTSAADVIQHLSSSLLVRMIHTKDGSRIGVLCIKHGSAKERKKIVKGMKGHVKKIAHEQYAVMLYLFYLIVNPPISYYGVLVSIISVVDDTKLIRKIIINELEKDLKELILDKNGRRVVLQLLRPNCSRYFSPDDLASLNLSIPSLCNKTMPSSQSESGVDRAEEKADSDMGETEGEEVDGGEVSAEGSEAVEGGKKDPLIRRHELLVDSGLAEKLVDVCVNNAGEILRSNFGREVMYEVATGGADGILQSKLGEKLSGLYEAIASLAAEPKSEDAAAGDEHVLENFHSSRTIRKLILDCPAFALTLWTTALEGKSKLWAQGHSCKIVQAFLESTDSKVREISRVELQSLIDEGLLKIPDTKQSADKS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7597127 7602437 - Carg18864-RA Car08g01122 153696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01122 677 MobiDBLite consensus disorder prediction 479 493 - -
Car08g01122 677 MobiDBLite consensus disorder prediction 1 72 - -
Car08g01122 677 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 101 476 IPR033133 GO:0003723
Car08g01122 677 ProSiteProfiles Pumilio RNA-binding repeat profile. 195 231 IPR001313 GO:0003723
Car08g01122 677 Pfam CPL (NUC119) domain 503 606 IPR012959 GO:0003723
Car08g01122 677 MobiDBLite consensus disorder prediction 459 504 - -
Car08g01122 677 MobiDBLite consensus disorder prediction 53 72 - -
Car08g01122 677 Pfam Pumilio-family RNA binding repeat 199 232 IPR001313 GO:0003723
Car08g01122 677 Pfam Pumilio-family RNA binding repeat 138 160 IPR001313 GO:0003723
Car08g01122 677 Pfam Pumilio-family RNA binding repeat 163 189 IPR001313 GO:0003723
Car08g01122 677 SMART pum_5 320 355 IPR001313 GO:0003723
Car08g01122 677 SMART pum_5 159 194 IPR001313 GO:0003723
Car08g01122 677 SMART pum_5 410 447 IPR001313 GO:0003723
Car08g01122 677 SMART pum_5 123 158 IPR001313 GO:0003723
Car08g01122 677 SMART pum_5 195 230 IPR001313 GO:0003723
Car08g01122 677 Coils Coil 68 88 - -
Car08g01122 677 ProSiteProfiles Pumilio RNA-binding repeat profile. 159 194 IPR001313 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01122 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01122 Car-Chr8:7597127 Car08g00981 Car-Chr8:6566448 1.09E-14 dispersed
Car08g01122 Car-Chr8:7597127 Car04g00185 Car-Chr4:1017558 4.50E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01122 Car_Chr08 FPKM 0.0 0.0 0.88797 0.0 0.0 0.0 0.0 0.0 0.0 0.0