Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01123 ATGATTATTTTTCTTCCTCTTTATGTTAAGATCTGGGACACGTTGAAAGGTCAGATACAGACGGAGTTTGCAGATTTCTTTACAACCGATTCAACGAGCATACTAACGAAATCAGGAAAAGGGCATCTATCTGTTGATTATAAATGCATGAAATGGTTGTCATTGGAGAAAAAGAGAAAAAGAAAGCGCCAATGTTCGTTGTTGTTGTTAGGAACTGGTAGTGGTGATGTTATGGCTCTTGATGTAGCAGCTGGGGAATTGAAGTGGAAAATAAGTGATTGTCATCCTGGTGGTGTTGCTACAATTTCGTTTCCTACACACGGTTCGTGCATTTATACTGCTGGTGCCGATGGAATGCTATGCGAAATTGATTCTGTGACGGGAAGCCTGTTGAGGAAGTTCAAGGCTTCAACAAAGGCAATATCCTGTATTTCTGTTTCTCCAGATGGAAAGAAAATAGCAACTGCAGCCTCGCAAATGAAGATTTTCAATTGTTCTGATCACAAAAAGATACAGAAGTTTTCCGGGCATCCTGGAGCTGTTCGATGTATGGTTTTTACCGAAGATGGAAAATACATTCTTTCATCTGGGGTTGGTGAAAGGTATATCGTTGTTTGGAGTTTAGGCGGAGAGAAAAAGCAATCAGCTAGTTGTGTTCTCGCAATGGAGCACCCTGCCATCTTCGTGGACAGCAGGCGCTCGAGTGGTGGTGGAGTTGATGAAACTGCGCTGTACGTTTTGGCTATATCAGAAATTGGTGTTTGTTATTTATGGTATGGACAGAATCTCGAAGAGTTACGAAGTGTCAAGCCTACTAAAGTATTGATATCTAACAATGATATTTCCTCCAAGAGTAAAAAACGGGTAGCACCTTCGATTTATGCTGCACAATTTCAAGGAATTCCGAAATCTGGGTCGGGCCAGGTTTTCCTTGCTCATGGATTGCTAGTGAAACCTTCATTTCAAAACGTCGTGGTGCACTCCGGTACTGACATAACTTTAAACAGCTCCAATGATGGAATTCTTCTGCCGAGTCATTCGGTCGGAAAATCTAAGAAGGGTTTAGATGTACAGGGAGGAGTCGTTGCATTAGATCGAGCTAATGCTGAAGATGCCTTGCGTCCAATTCCGAAGGTTTTCGATTCTCAAGAGAAACGTACCTTATATCACGATTTACATGTTGACCGCGATGATGTTATGACCGAATTGGTTGACAGTGGGAGCCAAGTAGAAGTCTGGTTGTCAATTCTCCTTGCCCCAGATGTTGTCGGAGTGGAGGACTCTGCAGCAGTTTGCCTGGAGGACAAACTCCGATCGTTGGGCATACTCGACAGTACAGACGATCATACATCTGAATCCATCCTTAAGTCTGCAATATTCAAAGGCATCGATCTTGAAGCTAATATGTCACAGAAAAAGTTAAGAGAAGCGGTTTTATCGTTAGCACCGGGCGATGCATGCAAGTTGCTTGGTAACTTGGTTAGCATCTGGCAATCCAGGTTGCGTAGCGGGAAGAACGTCCTACCGTGGATTTATAGTTTATTGTTGAATCACAATCAACATATCTTGTCTCAAGAACAGTCAACCCAGATTCTTGATTCTTTGTTTAAGATTACTAAATCCAAAGAGACTGCAGTTCAACCTCTTCTTCAATTATCAGGTCGTTTGCAACTGGTGTTGGCACAAATTGAAAGGGCGTCGGCCAACAAAACCGACCAAACGGTACGACATGGTCCCGAGATAGATGGAGGGGAGAGCAGCAACGACGAAGACGACAAAGAAGTCGACGATGTTCTTTATGGGGAAGAAGAATATGAATCTGAATTAAGCAGTGATAATGAGAATTAG 1848 42.75 MIIFLPLYVKIWDTLKGQIQTEFADFFTTDSTSILTKSGKGHLSVDYKCMKWLSLEKKRKRKRQCSLLLLGTGSGDVMALDVAAGELKWKISDCHPGGVATISFPTHGSCIYTAGADGMLCEIDSVTGSLLRKFKASTKAISCISVSPDGKKIATAASQMKIFNCSDHKKIQKFSGHPGAVRCMVFTEDGKYILSSGVGERYIVVWSLGGEKKQSASCVLAMEHPAIFVDSRRSSGGGVDETALYVLAISEIGVCYLWYGQNLEELRSVKPTKVLISNNDISSKSKKRVAPSIYAAQFQGIPKSGSGQVFLAHGLLVKPSFQNVVVHSGTDITLNSSNDGILLPSHSVGKSKKGLDVQGGVVALDRANAEDALRPIPKVFDSQEKRTLYHDLHVDRDDVMTELVDSGSQVEVWLSILLAPDVVGVEDSAAVCLEDKLRSLGILDSTDDHTSESILKSAIFKGIDLEANMSQKKLREAVLSLAPGDACKLLGNLVSIWQSRLRSGKNVLPWIYSLLLNHNQHILSQEQSTQILDSLFKITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTVRHGPEIDGGESSNDEDDKEVDDVLYGEEEYESELSSDNEN 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7603435 7608148 + Carg18865-RA Car08g01123 153697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01123 615 MobiDBLite consensus disorder prediction 585 615 - -
Car08g01123 615 MobiDBLite consensus disorder prediction 569 615 - -
Car08g01123 615 Pfam WD domain, G-beta repeat 170 207 IPR001680 GO:0005515
Car08g01123 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 216 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01123 K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5 - csv:101213788 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00556 Car-Chr8:3699248 Car08g01123 Car-Chr8:7603435 1.35E-21 dispersed
Car08g00557 Car-Chr8:3700816 Car08g01123 Car-Chr8:7603435 5.29E-15 dispersed
Car08g01123 Car-Chr8:7603435 Car08g00308 Car-Chr8:1972092 3.13E-07 dispersed
Car08g01123 Car-Chr8:7603435 Car04g01761 Car-Chr4:10095113 2.66E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g131 . . . . . . . . Cmo08g01221 . . . . . . . . . . . . . . . Cla06g00453 Cam06g0483 Cec06g0487 Cco06g0486 Clacu06g0470 Cmu06g0470 Cre06g1244 . . . . . Csa06g01770 Chy11g01541 . . . . . . . . . . . . Cma08g01250 . Car08g01123 . . Cpe17g00044 Bhi12g02020 . . . Hepe03g0074 . . . . . . . . . Lsi09g01461 . . Cme11g02049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007402 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01123 Car_Chr08 FPKM 0.0 0.0 0.610846 0.77789 1.406809 1.671826 1.469458 3.802603 4.114621 3.269878