Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01126 ATGGATCTAAGCCACATGAAGGGATCGATACCGACGCCGACTTCAATTTCAGATAGAAAAGCCACTGAAATGGTTTCTGATCAGTTCCCGGCGGGCCTTCGCGTCCTGGTTGTGGATGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCTGTGACGAAATGTAATCGGGCTGAGATCGCATTATCCATGCTTCGTGAGAACAAAAACGGGTTTGATATTGTGTTAAGTGACGTGCATATGCCAGACATGGATGGATTCAAACTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCCGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGAATTGAAGCGCTCAGGAACATATGGCAACATGTAGTTCGGAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGATGGCGATCGAGAGAAAAATGTATCTGAAGGTGCTAACTATTCATCTTCAGTATATGAAGGAAGTTGGAACAGCTCAAAGAGGAGGAGGGATACAGAAGAAGAGGCCGAGGAGAGGGACGATACGTCGACTTTAAAGAAGCCTAGGGTGGTATGGTCGGTTGAGCTCCATCAACAGTTTGTCGCCGCAGTTAAACAGCTAGGAATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAACGTTCCGGGGCTTACTCGAGAAAATGTTGCCAGTCACCTCCAGAAATATCGGTTATATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACTCCAATGTAATTTGAACAATTCTTTTATGAACCCTCAAGATCCACCTTTTGGGCCAATGGCTTCATTCAATGGAATTGATCTTCGGACACTTTCGGTCACTGGCCATCTCTCGCCTCAAAGCCTTGCTGCACTCCAAGCAACCGAATTTCGAAGGCCTGCTACAGCGAAATCTAGCATGTCGATGGCCCTTGTTGATCAGAACAACCTATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACGCCACACCTAAACAACAGTAAACCAATAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCATTATGCACCCTTCTGTGCAGACTCAAGGGAACATAAACATGCCACTCAATATCAAGACAGAACATGGTGGAACTCAACAAATGCATCATTTGTCCCATCAGCAAACTGGAGGACAGGCTCTAAGTAACTCTCCTGCTAGCCACTTACCCAGAATTTCATCGTCGTTTCCGATCATATCAGGTAGCATTACGAGTCGAAATGGGACTGCTGATAGTACCCAAGGACCTGGATATAACCTAGTTTCGCCAGCATCCTTGATGATGAACTTTCCAATGAACCAACTCACAGAATTGTCAAACAATTTTTCTCTTCCGAGTGATTCGACGGTATCTACCTTAACCTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTACATGGGTCGGACGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCCGAAATCCCATGACTGGGATTCTCAGAATGTAGGCAGCTTGGCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATAGCTTTGATGTCTCACCTTCAACTTTGATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCATAATTCATCCTCTGCTGGAAAGACTATCTTTCCCTTTTCGGATGCAACTCAACCCGAGAATGCGCAGAGTAATGCCGAGAAGTTGCCTCTTGATCCCGGGGATGTCAAACCTCAGAGAATCCCCGATGCAAGCTATCAAACCGACCTCTTATCTGAGAACTTTGGCCAGGATGAACTTCTCAGTGTCTTCCTCAAACAAGAACAACAAGGAGACAACGGATCGGTCGACTTTAGCGGTTACCAAACGGAAAATATTTGCGTTTAG 2019 44.73 MDLSHMKGSIPTPTSISDRKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREKNVSEGANYSSSVYEGSWNSSKRRRDTEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVKQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSLQCNLNNSFMNPQDPPFGPMASFNGIDLRTLSVTGHLSPQSLAALQATEFRRPATAKSSMSMALVDQNNLFSFENPKLRFVEDQTPHLNNSKPINLFHGIPTKMEPKQLAIMHPSVQTQGNINMPLNIKTEHGGTQQMHHLSHQQTGGQALSNSPASHLPRISSSFPIISGSITSRNGTADSTQGPGYNLVSPASLMMNFPMNQLTELSNNFSLPSDSTVSTLTCKGVFQEEISSDLHGSDGLMSSYDVFSDLHLPKSHDWDSQNVGSLAFGTSHHGNFIQDSFDVSPSTLIHHGFPSSQTNGQNHNSSSAGKTIFPFSDATQPENAQSNAEKLPLDPGDVKPQRIPDASYQTDLLSENFGQDELLSVFLKQEQQGDNGSVDFSGYQTENICV 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7621855 7625067 + Carg18868-RA Car08g01126 153700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01126 672 MobiDBLite consensus disorder prediction 570 625 - -
Car08g01126 672 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Car08g01126 672 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Car08g01126 672 MobiDBLite consensus disorder prediction 570 609 - -
Car08g01126 672 MobiDBLite consensus disorder prediction 175 189 - -
Car08g01126 672 MobiDBLite consensus disorder prediction 159 210 - -
Car08g01126 672 MobiDBLite consensus disorder prediction 190 210 - -
Car08g01126 672 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Car08g01126 672 MobiDBLite consensus disorder prediction 412 436 - -
Car08g01126 672 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Car08g01126 672 MobiDBLite consensus disorder prediction 159 174 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01314 Car08g01126 CCT
Car08g01126 Car14g01419 CCT
Car08g01126 Car14g01419 ECH
Car06g01314 Car08g01126 ECH
Car08g01126 Car17g00322 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01540 Car-Chr4:8949063 Car08g01126 Car-Chr8:7621855 5.02E-30 dispersed
Car08g01126 Car-Chr8:7621855 Car09g00371 Car-Chr9:2032866 1.50E-102 dispersed
Car16g00131 Car-Chr16:757197 Car08g01126 Car-Chr8:7621855 2.21E-48 dispersed
Car05g00053 Car-Chr5:258197 Car08g01126 Car-Chr8:7621855 9.62E-97 transposed
Car12g00045 Car-Chr12:202168 Car08g01126 Car-Chr8:7621855 9.41E-96 transposed
Car14g01419 Car-Chr14:11919856 Car08g01126 Car-Chr8:7621855 0 wgd
Car17g00322 Car-Chr17:2014483 Car08g01126 Car-Chr8:7621855 0 wgd
Car06g01314 Car-Chr6:9404028 Car08g01126 Car-Chr8:7621855 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4018 PF00072 Response_reg 7.70E-22 CL0304 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01126 - K14491 csv:101210138 1109.75