Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01127 ATGTCGTTGAGACCGACTGCAAGAACCGAGGTTCGTCGGAACCGTTATAAGGTCTCTGTCGATGCTGAAGAGGGCCGTCGCCGGCGAGAAGATAATATGGTGGAGATCAGGAAGAGTAAACGCGAAGAGAGCCTTCAGAAGAAGCGTAGGGAAGGCCTTCAAGCACAGCAGTTTCCTTCTGCTGTCCACACTTCCACTGTCGAGAAGAAGTTAGAGAGCCTTCCGTCTATGGTTGCGGGGGTCTGGTCTGATAATAGTAATCTTCAGCTGGAGGCAACAACTCAGTTTCGGAAATTACTTTCGATTGAACGAAGCCCTCCCATTGAGGAGGTGATTCAATCTGGAGTTGTTCCGCGGTTTGTAGAATTTCTTGTGAGGGAGGATTTCCCTCAACTTCAGTTTGAAGCTGCTTGGGCTCTCACGAACATAGCGTCTGGAACCTCGGAGCACACAAAGGTGGTTATTGATCATGGTGCAGTTCCCATTTTTGTTAAGTTACTTGCGTCTCCTAGTGATGATGTTCGAGAGCAGGCTGTGTGGGCTTTGGGCAATGTTGCTGGAGATTCACCTACCTGCCGTGATCTTGTCCTCCGCCATGGAGCTTTGGTTCCACTTCTTTCGCAGTTGAATGAGCATGCTAAGCTTTCCATGTTGCGAAATGCTACTTGGACACTTTCGAACTTTTGCCGGGGCAAGCCACAACCTCCATTTGATCAGGTAAAGCCGGCTCTTCCTGCACTTGAGCGCCTAGTTCACTCGAATGACGAAGAAGTTCTGACAGATGCCTGCTGGGCTCTCTCTTATCTTTCTGATGGCACGAACGATAAAATCCAAGCCGTGATTGAGGCAGGGGTGTGCGGGCGACTTGTACAGCTTCTATTACATCCTTCACCATCAGTTCTCATTCCTGCACTTCGGACAGTTGGGAATATCGTGACCGGAGATGACCTTCAAACTCAGTGTATCATTAGTGATGGTGCGCTTCCATGCCTTCTGAGCTTAATGACTCACAATCATAAGAAGAGTATCAAGAAAGAGGCTTGCTGGACAATATCTAACATTACTGCTGGAAACAAGGAACAAATCCAGGCTGTCATTGATGCTGGGTTAATACCTCCGCTAGTGAATTTGCTTCAAACTGCTGAGTTTGACATAAAAAAAGAGGCTGCATGGGCAATTTCAAATGCAACATCTGGTGGAGCTCATGATCAAATTAAGTACCTTGTCACTGAAGGGTGCATCAAACCATTATGTGATCTTCTTGTATGCCCAGATCCTAGGATTGTTACGGTTTGTTTAGAAGGGTTAGAGAACATTTTGAAGGTCGGAGAAGCCGAGAAGAATTTGGGTGCCAGTGGAGACGTTAATCTATATGCGCAGATGATCGATGATGCCGAGGGTTTAGAAAAGATTGAAAATCTCCAGAGTCATGACAACCATGAGATCTATGAGAAGGCTGTCAAAATTCTCGAGACGTATTGGTTGGAGGAAGAGGATGACGCCTTGGCTGCTACTGATGGTGAGGCTCAACCTGGCTTCCGCTTCGGTGGAAACGCGCTTCCAGTTCCTTCTGGTGGATTCAACTTTAGTTGA 1593 47.27 MSLRPTARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQFPSAVHTSTVEKKLESLPSMVAGVWSDNSNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPTCRDLVLRHGALVPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDLQTQCIISDGALPCLLSLMTHNHKKSIKKEACWTISNITAGNKEQIQAVIDAGLIPPLVNLLQTAEFDIKKEAAWAISNATSGGAHDQIKYLVTEGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGASGDVNLYAQMIDDAEGLEKIENLQSHDNHEIYEKAVKILETYWLEEEDDALAATDGEAQPGFRFGGNALPVPSGGFNFS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7626758 7630043 + Carg18869-RA Car08g01127 153701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01127 530 MobiDBLite consensus disorder prediction 8 50 - -
Car08g01127 530 Pfam Importin beta binding domain 12 94 IPR002652 GO:0006606|GO:0061608
Car08g01127 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 158 IPR000225 GO:0005515
Car08g01127 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Car08g01127 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 369 IPR000225 GO:0005515
Car08g01127 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Car08g01127 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 158 200 IPR000225 GO:0005515
Car08g01127 530 MobiDBLite consensus disorder prediction 1 59 - -
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 105 145 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 148 186 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 316 356 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 403 439 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 192 230 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 243 270 IPR000225 GO:0005515
Car08g01127 530 Pfam Armadillo/beta-catenin-like repeat 358 397 IPR000225 GO:0005515
Car08g01127 530 Pfam Atypical Arm repeat 456 502 IPR032413 -
Car08g01127 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 397 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01127 K15042 KPNA5_6; importin subunit alpha-6/7 - csv:101209891 1014.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01127 Car-Chr8:7626758 Car12g01003 Car-Chr12:10014816 0 dispersed
Car17g00323 Car-Chr17:2021174 Car08g01127 Car-Chr8:7626758 0 wgd
Car05g00957 Car-Chr5:9174301 Car08g01127 Car-Chr8:7626758 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g109 . . . . . Bpe14g01107 . . Cmo08g01226 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0734 Cone15ag0744 Cone7ag0115 Cone4ag0119 . Csa06g01764 . . Blo02g00486 Blo07g00158 Bda11g00512 Bda13g00208 . Bpe13g00685 Bma02g00920 Bma06g01480 . . . Cma08g01256 . Car08g01127 . . Cpe17g00048 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000840 4 2 4 5 4 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 3 2 2 2 2 2 4 7 3 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01127 Car_Chr08 FPKM 6.860883 7.232381 12.914166 12.576605 16.554754 15.091188 14.839744 6.637109 7.051099 6.66173