Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01136 ATGTCTCTCGCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTACAAGAATTGGATGTTACAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATTCATGCAATTCTATGTAACTACAAATATTTTGTCATCCACGTCAAGCCAGTCAACTTGCCCACAAGTGGAACCATTGTACTATTTAACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACCATAAAAGAAGCACACGAACACCTAAAAGTTGGTAATGTAGAAAGGATACACGTATACTATGCCCATGGCCTAGATAACACAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTTGTTCATTACCGTGAAACACAAGAGGTCAATTTTAGCCCAATGCATCTGCAGTTGCAGAGCTCTCCATCCATGTCTATGAATTCAAATTCTGGTTCTGTCTCTGACCCATCAACTCCTTGCCTTTTATCGGAAGAACTTGATTCTAGGGATAATCATGGTTATTCCATTGACAAAAATGAACGTTCAGAGCCAAGAGACACTACAACAGCCATGAATCATGAACAACGGCTTCATGAGATCAACACGCTCGAGTGGGATGAACTTCTTGTGACAGACGAGCCTTTCAAACCTTCCATACCTAAAGGAGACAGATTTTCATACTTTGACCAACGGAGCCAAGTCCCAACAAATGTGGCCAACAATTTATTGGGGAACACGCCTTTGTTTAATAATCCAGTTGAGCCAATTGGGAGTGCCTATATGCCACTAACAAGTGGTCAAACAAATTTAAATGTGGAGAGTAAGGAATCCATTCCAATTACTTCATTGGACAATTTGTTAAATGATGGATTGCTGCAAAGCCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACTGAGTCTCCTGATACAGTTGATCCTGCCATTGAGCCATCCATTTCATCCATTCACAATTCTTTTACCGATCCAACATTAAATCACTGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATATCTCACCTGCGTGGGCCTTTTCAACAGAAAAAACCAAGATTCTAATCGCGGGATATTTTCACAATGAGTACTTGCATCTGGCAAACTCCAATATATTGGTCGTGTGTGGTAATGCCAGTGTTAATGCTGATTTAATTCAACCTGGAGTTTATCGATGTGTGGTACAACCACATTCAACTGGACTAGTAAATTTATTCGTGAGCTTAGATGGTCATAAACCTATCAGTCAAGTTCTGAATTTTGAGTATCGTGCACCACTTTTACGAGAGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAGAAGCCTGAGCATCATGTCGACTAAATTGTCGCCCACTTCCCTGAACGAGGCCAGGAAATTTGCTGTCAAAACTTCTGACATTTCTGACAGTTGGATTTATTTGTTAAACTCAATAAAAGAAAATAACACTCCATTTCCTCAAGCAAGAGACGGTGTTCTTGAGATCATTTTGAAAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGATTTCGATATAAAAGGTCAGGGAGTAATCCATTTGTGTGCCATCTTGGGATATACCTGGGCTATACATCTATTTGCATGGTCTGGTTTATCAATAAATTTTCGAGATAAATTCGGATGGACATCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTAGCTGTTCTTTTGTCAGTTGGGGCAAAACCAAACTTGGTCACTGATCCCTCATCAAAGAACCCTCTGGGATACACAGCTGCAGATCTTGCATCTTTGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTGTCACATTTTAATGATATGAGCTTGGCTGGAAATGTTCGTGGTTCATTGGAAACTAGTACTATGACCGATGTCACTAACTCGGATAGCATCAGCGAGGAGCAGATGTATATGAAAGATACATTGGCAGCTTACCGAACAGCTGCTGATGCAGCAGCGCGCATACAAACTGCATTCCGTGAGAATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTGTTGCAGCCATGAAGATTCAACATGCTTACCGCAACTTTGAGTCACGAAAAAGAATGGCAGCTGCAGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGCAAAGAGTTCCTTAATATGCGTCGTCATGCTATTAGGATTCAAGCTGCATTTAGAGGCTTCCAAATGCGGAGGCAGTATCGCAAGATTTTATGGTCGGTAGGTGTAATCGATAAAGCCATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGTGACAGAACAGCAGGAAATTGGCGTAGAAGAGGACTTCTACCACGTGTCCCAAAAACAAGCAGAAGAGCGAGTAGAGAAAGCTGTTGTACGGGTTCAGGCTCTGTTTCGATCAAAGAAAGCTCAAGAGGAGTATCGAAGGATGAAGTTAACCTACAATGAAGCAGCGCTGGAATATGAAGAACTTTCACATCCTGATATGAATTTGAGTAGCTGA 2757 41.89 MSLAMKADVQGSLVGSEIHGFHTLQELDVTNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPTSGTIVLFNRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNVERIHVYYAHGLDNTTFVRRCYWLLDKTLEHIVLVHYRETQEVNFSPMHLQLQSSPSMSMNSNSGSVSDPSTPCLLSEELDSRDNHGYSIDKNERSEPRDTTTAMNHEQRLHEINTLEWDELLVTDEPFKPSIPKGDRFSYFDQRSQVPTNVANNLLGNTPLFNNPVEPIGSAYMPLTSGQTNLNVESKESIPITSLDNLLNDGLLQSQDSFGRWINEVITESPDTVDPAIEPSISSIHNSFTDPTLNHCQSSVMEQIFNITDISPAWAFSTEKTKILIAGYFHNEYLHLANSNILVVCGNASVNADLIQPGVYRCVVQPHSTGLVNLFVSLDGHKPISQVLNFEYRAPLLREPVVASEQIQKWEEFQVQMRLAHLLFSTSRSLSIMSTKLSPTSLNEARKFAVKTSDISDSWIYLLNSIKENNTPFPQARDGVLEIILKSRLREWLIERVAEGSKKSTDFDIKGQGVIHLCAILGYTWAIHLFAWSGLSINFRDKFGWTSLHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYTAADLASLNGYDGLAAYLSEKALVSHFNDMSLAGNVRGSLETSTMTDVTNSDSISEEQMYMKDTLAAYRTAADAAARIQTAFRENSLKQRTQAIEFSTPEDEARGIVAAMKIQHAYRNFESRKRMAAAARIQYRFRTWKIRKEFLNMRRHAIRIQAAFRGFQMRRQYRKILWSVGVIDKAILRWRLKRKGFRGLQVAPAEVTEQQEIGVEEDFYHVSQKQAEERVEKAVVRVQALFRSKKAQEEYRRMKLTYNEAALEYEELSHPDMNLSS 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7669377 7679158 + Carg18878-RA Car08g01136 153710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01136 918 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Car08g01136 918 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Car08g01136 918 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Car08g01136 918 ProSiteProfiles IQ motif profile. 771 797 IPR000048 GO:0005515
Car08g01136 918 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Car08g01136 918 Pfam IPT/TIG domain 370 455 IPR002909 -
Car08g01136 918 Pfam IQ calmodulin-binding motif 795 815 IPR000048 GO:0005515
Car08g01136 918 Pfam Ankyrin repeats (3 copies) 555 635 IPR002110 GO:0005515
Car08g01136 918 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Car08g01136 918 Coils Coil 885 905 - -
Car08g01136 918 MobiDBLite consensus disorder prediction 192 214 - -
Car08g01136 918 Pfam CG-1 domain 36 148 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01136 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1424.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g01136 Car17g00331 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01136 Car-Chr8:7669377 Car16g00743 Car-Chr16:4680164 2.33E-128 dispersed
Car17g00331 Car-Chr17:2072407 Car08g01136 Car-Chr8:7669377 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4021 PF03859 CG-1 2.10E-44 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01136 Car_Chr08 FPKM 11.126126 11.166913 15.591756 16.610544 14.722299 16.700087 14.001781 16.401842 16.565939 17.316818