Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01143 ATGGCGGACCCGAAAACCAGAGCACAACTCGCCGGAGGAATGACCGCCACTGACTCATGGATCAGAAAGCACCGTCTCATCTACACCGACGCCACACGCCATCCTTTCGTCCTCTCCATTCGCGACGGCACCGTCGATCTCTCCGCCTTCAGAACTTGGGTGGAACAGCAATGCGAATTTCTGAGATCCTTCACGGCGTTCGTCGCAAGTGTGTTGGTTAAAGCATGGAAAGAATCGGACGATAGAGCGGACGAGGAAGTGATCCTTGGTAGTTTGGCTACTCTCAACGACGAATTCGCGTGGTTCAAAAAGGAAGCCTTAAAACGAGATATCGACCTGACTAAAATTGTTCCTCAGAATGCAACCGCCGGCTATTCCAGGTTTCTGGAGAGTCTGATGCGGCCGGAAATGGAGTACACGGTGGCGATTACGGCTCTTTGGGCTATCGAAGCTGTGTACAACGAGAGCTTTGCGTACTGCATGGAAGATGGATCAAAAACGCCATTGGAATTGAGAGAAGCCTGCGAAAGATGGGGGAACGAAGGATTTGGAAACTACTGCAATACCTTGAAGAAGATTGTGGATAGACGATTGGAGATGGCTGCTGGCGAAATAAGTAAGAAAACAGAAGTGGCATTGTTGCGGGTTCTTGAATGTGAGGTTGAGTTTTGGAATATGAGCCGGGATGGTCCACAACAAACTATTTGA 708 49.58 MADPKTRAQLAGGMTATDSWIRKHRLIYTDATRHPFVLSIRDGTVDLSAFRTWVEQQCEFLRSFTAFVASVLVKAWKESDDRADEEVILGSLATLNDEFAWFKKEALKRDIDLTKIVPQNATAGYSRFLESLMRPEMEYTVAITALWAIEAVYNESFAYCMEDGSKTPLELREACERWGNEGFGNYCNTLKKIVDRRLEMAAGEISKKTEVALLRVLECEVEFWNMSRDGPQQTI 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7701758 7702653 - Carg18885-RA Car08g01143 153717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01143 235 Pfam TENA/THI-4/PQQC family 22 229 IPR004305 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01143 K20896 TENA_E; formylaminopyrimidine deformylase / aminopyrimidine aminohydrolase [EC:3.5.1.- 3.5.99.-] - csv:101209552 390.578
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g82 . . . . . . . . Cmo08g01241 . . . . . . . . . . . . . . . Cla06g00432 Cam06g0458 Cec06g0464 Cco06g0463 Clacu06g0445 Cmu06g0446 Cre06g1222 . . . . . Csa06g01742 Chy11g01564 . . Blo07g00151 Bda11g00505 . . Bpe13g00692 . Bma06g01472 Sed04g2388 . . Cma08g01273 . Car08g01143 . . Cpe17g00063 Bhi12g01924 Tan06g2749 Cmetu11g2014 Lac11g0930 . . Lcy12g0801 . . . . . . . Lsi09g01486 . . Cme11g02076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010279 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 3 3 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g01143 Car_Chr08 FPKM 10.366291 10.780437 12.226617 12.099683 11.302321 11.171977 12.429333 11.771338 10.171373 11.543834