Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g01146	ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAGGAAATGTCCAAATTTCTTCTCTCTGGAACTTCCGCTGACTCGAACTCTGACCACCAAATCCAGTATCATCATCATCACCATCAGCGTTCTCAATCGATATCGCCTCAGCGCTCTAGATTTGCTGCGGCACAGAGGAGAGGTGGCGCTGCTGGAGGTTCAGACAGCGCCGCGGCGGCGTGGAAGAAAGGCTCTTCCTCGTTTCGGCATTCTTCTCCACTTCAGAGGGAGAGTAGGACTTGTGAACCCTCGAATGCCGCCGCCGGAGTCGGAACCAGCGGCGGCTCTGGCCCCGCCGCCGTTAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTCCATATTTTAGACCTAAATTATCGCATAATTTACTGGAACCGAGCTGCTGAAATCGTGTATGGATATTCTGCGGCGGAGGCTCTCGGCCAGGATGGCATTGCGCTTCTAGTAGACTCTGAGGACTTTGCCTTTGCAAATGATGTAATTCATCGTGTTATGGCGGGCAAGCATTGGACTGGTCACTTCCCTGTGAAGAACAAGATGGGGCAGAAGTTTGTAGTTGTTGCCACCGACACTCCCTTCTACGATGATGGTGTCTTGGTCGGGATCATCTGTATATCGAGCGACTCTCGTCCATTTCAAGAGTTGAAGATTCCTTTAGCAGCAGGTTCTGAACAGCAGGATGCAGATTCAAGCATTGTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTGCAAGTAGCAATTGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGCGGAGATGGTTATCACTCTGATCATGGCTTTCCAGATGCAACTCTTCGTGACCATCGGGAGGACGCAAATTCAAGTGGAGCTAGCACACCTCGTGGAGATTCGACGACGCATGGTGAGTTTTCCCAGGTTGAAGAGCAATTATCTGGCAAACAGGTCAGGAATCATGATGATGAGGTTAAAGGAAAGCCTACCATTCAGAAGATGTTATCCTCAAAAGCAGAAGAGTGGATTGCTAAGAAGGGCTTATCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGGGCAGCCCGTTTTGTGTGGCCTTGGTTACAAAATGATCAAGAAGCTGAACCAGCAAAGCATAAGAGTTGCTCTTCATCTGGGAAACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGCCAATAACGAGGCCTCGGGATCCTGGTCATCGTTCAATGTTAACAGCACAAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTCGACTCGGAAACAGACTGCTTGGATTTTGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAACTCCGACACCCGAACATTCTTCTCTTTATGGGCGTTGTGACTTCACCTCATCGTCTTTGCATAGTCACGGAATTCCTCCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACGCAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGTGGCATGAACTATCTTCATCATTGCAATCCGCCTATTATTCACCGAGATTTGAAATCGTCGAACCTGTTAATTGATAGAAATTGGACTGTGAAGGTTGGAGATTTTGGTTTATCTCGACTTAAGCACGAGACTTATCTAACTACGAAGACGGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGCAATGAGCCCTCAGATGAGAAGTCGGACATATATAGTTTTGGAGTGATATTATGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTTATTGGTGCTGTTGGGTTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCTCAATGGGCTTCTATAATTGAAAGCTGCTGGCACAGCGAACCTGCAAATCGGCCATCATTCCAGGGTCTGATAGAAAGGTTGAGAGAGGTGCAGAGGAAGTTTGCTAGTCAATTACAGGCAGCTCGTTTTGGTGGAGATAATAACGCTCAAAAGGAAACATAA	2352	47.58	MGTPPAEELLRKIQELEEGQAHLKKEMSKFLLSGTSADSNSDHQIQYHHHHHQRSQSISPQRSRFAAAQRRGGAAGGSDSAAAAWKKGSSSFRHSSPLQRESRTCEPSNAAAGVGTSGGSGPAAVNFTNKQYLNILQSMGQSVHILDLNYRIIYWNRAAEIVYGYSAAEALGQDGIALLVDSEDFAFANDVIHRVMAGKHWTGHFPVKNKMGQKFVVVATDTPFYDDGVLVGIICISSDSRPFQELKIPLAAGSEQQDADSSIVRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDGYHSDHGFPDATLRDHREDANSSGASTPRGDSTTHGEFSQVEEQLSGKQVRNHDDEVKGKPTIQKMLSSKAEEWIAKKGLSWPWKGTEQEGGSEARAARFVWPWLQNDQEAEPAKHKSCSSSGKPEMQQNDGHRAANNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDSETDCLDFEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPHRLCIVTEFLPRGSLFRLLQRNAGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDRNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQGLIERLREVQRKFASQLQAARFGGDNNAQKET	783

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7718281	7722853	+	Carg18888-RA	Car08g01146	153720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g01146	783	Pfam	Protein tyrosine and serine/threonine kinase	505	757	IPR001245	GO:0004672\|GO:0006468
	Car08g01146	783	MobiDBLite	consensus disorder prediction	89	119	-	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	298	382	-	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	429	463	-	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	32	119	-	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	441	463	-	-
	Car08g01146	783	ProSiteProfiles	Protein kinase domain profile.	505	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g01146	783	MobiDBLite	consensus disorder prediction	367	381	-	-
	Car08g01146	783	Pfam	PAS fold	131	236	IPR013767	GO:0006355
	Car08g01146	783	Coils	Coil	6	26	-	-
	Car08g01146	783	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	624	636	IPR008271	GO:0004672\|GO:0006468
	Car08g01146	783	ProSiteProfiles	PAS repeat profile.	128	199	IPR000014	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	302	342	-	-
	Car08g01146	783	MobiDBLite	consensus disorder prediction	343	366	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Car08g01146	Car17g00344	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car08g01146	Car-Chr8:7718281	Car10g00915	Car-Chr10:6521820	3.38E-115	dispersed
	Car17g00344	Car-Chr17:2156736	Car08g01146	Car-Chr8:7718281	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	89069	PF07714	PK_Tyr_Ser-Thr	1.20E-68	CL0016	Car	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g01146	-		-	bhj:120067055	1291.56