Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01163 ATGAAAACCGGGAGGAGCCAAGTCAAATACAGTGCAGAGAAGATTGAAAACCTGTTTTTGAAACCTAAGTATGCCCGGTTCAACTCTATCTCTACTCATCTTGGAATTTTCCCCTCAGGACAGGCAGTTAAATGTTCAGATATCGCTGAAGATGCCCATATAGTGTCAACTGCCACAGATTTTGTTCCAAATATTCGATCTGGTAGCTACGCGGACATTGGAGCTCGGGATTCTATGGATGATGAACATATCTGCATTGATGATCTGTCTACCCACCTCAGATCTATGTTCAAGTGTCCTGTGCCAAGTGGTTTTTATGCTGTTTTCGATGGTCATGGAGGGCCTCATGCAGCTGGCTTTATCAAGAGGAATGCCATTAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTAGTTCTATTTCCATGAAAGATTTGGAGAGTTCTCATCGCAAAGCGTTTCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTGGAAGCTCATGTGGGACAACTGCGTTGACGGCATTGATTCTTGGAAGTCATTTGCTTGTTGCAAATGCTGGTGACTGCCGAGCGGTCCTATGTAGGAAAGGTGTAGCTGTTCCAATGTCTCAAGATCACAGGCCTTCTAATTTACTCGAGCGCAAGCGAGTGGAAGCGATGGGAGGGTTTGTAGATGATGGGTATGTGAATGGGTATATTTCAGTAACGAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATGGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAGCATGCTATTTTAACGAACGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGACGTAATGTCAAGCCAATACGCCGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCAAGAGTTAGTCTTGGAAGCCTTGCGCCTCAACACATCAGATAACCTTACTGCAATAGTAATCTGCCTTGCTTCTCCCAGCTGCATTGCTCAGCAGCGGATATGGAAGCCGCGTAGTCTGACCGAAGAGGCGAGAAGTAGGTTGAGGAGCTTGTTGGAAGGAAACTGA 1107 45.8 MKTGRSQVKYSAEKIENLFLKPKYARFNSISTHLGIFPSGQAVKCSDIAEDAHIVSTATDFVPNIRSGSYADIGARDSMDDEHICIDDLSTHLRSMFKCPVPSGFYAVFDGHGGPHAAGFIKRNAIRLFFEDADWLKMLDISSISMKDLESSHRKAFLLADLALADEQSVGSSCGTTALTALILGSHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLERKRVEAMGGFVDDGYVNGYISVTRTLGDWDLKLPNGSSSPLISEPQVEHAILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICLASPSCIAQQRIWKPRSLTEEARSRLRSLLEGN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7791056 7793124 - Carg18905-RA Car08g01163 153737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01163 368 Pfam Protein phosphatase 2C 74 328 IPR001932 -
Car08g01163 368 ProSiteProfiles PPM-type phosphatase domain profile. 66 336 IPR001932 -
Car08g01163 368 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00400 Car-Chr8:2592128 Car08g01163 Car-Chr8:7791056 3.15E-112 dispersed
Car08g01163 Car-Chr8:7791056 Car09g00033 Car-Chr9:162494 6.06E-89 dispersed
Car08g01163 Car-Chr8:7791056 Car17g00957 Car-Chr17:7770078 3.26E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4023 PF00481 PP2C 4.90E-63 CL0238 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01163 K14803 - csv:101207477 566.229