Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00007 ATGGTGAAGGAGACGGAATGCTGTGACGTGCCTGGACTCAGCCCCGCCGCTACAGAACCCGAAATCGTGAAAGCTTATCACATCGAGGAAGAGGTTGCAGTAGAAAAAGATCATGTAAGAGAATCGGGGACCCCTTGTATTACATCAAGACAATTGCAAGATACAGTTAACGCTCATCCAGATGACCCCTCCTCCCATTTCAAACTCGGGATTTTCCTGTGGGAAAATGGCGGAAGCCACGATAAGGCGGTTGCTGCGGATCATTTTCTGAAATCAGCGAAACTAGACCCTCAGAATGCTGCTGCTTTCAAATATCTAGGGGATTATTATGCCACATTTTCTGTTGACATCGAAAGGGCTCTCAAGTGCTACCAGAGAGCTGTCAGTCTTGATGTTCATGATTTTCACTCTGGAGAAGCATTGTGCGATCTGTTGCATCGTGAAGGAAAGGAGAGTTTAGAGGTTGCTATATGCAAAGAGGCTTCCTCTAAGTCAACTCGAGCCTTTTGGGCTTTCCGGAGGTTGGGCTATTTGCAGGTTTTTCAAAAGAAGTGGACTGAAGCCGTCTTAAGTCTTCAGCATGCCATTCGAGGATATCCTTCTTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCGTATCAGCGACTTGGCCGGTTTACTGCTGCAATTAAGTCATATGCACGGGCCATTGAAATTGAAGGAGATAGAATTCTTGCTTGGGTTGAGAGTGGAAATATCTTCTTGATGCTTGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCGAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTGCTTGGTTTGGCAAAGGAATGCATTAATAGGGGGGCGTTTAAATGGGCATCCTTTCTGTTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACATATTTAGCTGGGAACTTGTCGTGTATCTGGAAGTTGCTTGGAGATATTCAGCATACGTATGCAAAATGCTATCCATGGATGGAAGAGGACTGGGGGCTATGTGCAGAATCTTTTAGAACTTCTATCCTTTCCTGGAAGCAGACTCGCAGTTTGGCTTTATTGTCTGCCAAATGTTCCTATCAGCAAGCTCTACACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATATTATTTCAACTTTGAATGGTGATTCTGGATCTGAATTCAATTCCTGGCAGATATCTGAAAAGATGACATTAGGGGCCTTGATGCTCGAGGGTGACAATCATGAATTTTGGGTGGCAATGGGATGCATCTCTAACCATGATGCGTTGAAGCAACATGCTTTTATAAGAGCATTACAGTTGGATGGATCGATGGCTGGAGCCTGGGCTTATCTTGGGAAGCTATACAGGAATAGGGGAGAGATGCAATTGGCAAGACAGGCATTTAATTATGCCAGAAGTATAGATCCATCTCTGGCAATACCCTGGGCTGGCATGTCGGCTGATTTGAATACTAGCGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCATCAATACTACCAGTGGCGGAATTTCAAATTGGACTTGCCAAGCTTTCTCTGCAGGCGGGCCATCTTTCATCTCCACAGGTGTTCGGAGCCATACGTCAGGCTGTTCAACTTGCACCTTGTTACCCTGAATCCTATAATCTAAATGGATTAGCTTTTGAGGCACAATTGGATTATCAATCTGCTGTTGCTGCTTATCGTCTAGCACACCTCACGACTAGCCATTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAAATATATCCATCAACTTAGCCAGATCACTCTGCATGGTAGGAAATTTCTTTGAAGCTTCGCAGGAATATGAAAATTTGAGTAAAGAAGGCATGCTCGACATTGAAGGTCTGCAGGTGTATGCATTCTCATTATGGAAACTAGGAAAGAATGACCAGGCCCTTAGCACCGTGAGAACCCTTGCTTCTTGCATCTCTACCATGGAAAAAACACGTACTGCTGCATCTGTTGGTTTCATATGCAGATTGTTGTATTCAATATCTGGATTGGATTCCGCAATCAACAGTATCATGAAGATGCCAACCCATTTTTTCCGGAGTTCAAAAGTGGGCTTTGTAGTGGCTGCTATTCATGCCATAGATGGGTGTGATCGGCTTGACTCCATTGTTCTAAGCTGCCGTTCCTGCCTCCAGTCTCATGAAGAGATAACTAAAATGCACATTTTGATTGCACTTTCTAAGCTGATCAAACATCAAACGGATAACTGCCTGGGATTCCATAGTGGAGTGATGCATCTTAGAAAAGCTCTTCATGCATACCCCAACAGTAGTTTGATGAGGAACCTGCTTGGTTATCTTTTGCTATCCAACGAAGAAAGAGATGACAATCACACAGCTACTAGGTGCTGCAACATGTTGTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCATATGAAATTCACGGTGCTGGAGCTGTGTCCTGCTATACAATCGGCACGAGTCATCCGAGGTTTTCTTTCCCAACATGTTCATGCCAGTGTCAGAATGGAATTGGGACCATTCGACAACTTCAAAAATGCTTACGTCAAGACCCATGGAATTATGATGCTCGATATCTTCTTATACTAAACATTCTGCAGAAGGCACGTGAAGAAAGATTTCCCTGTCATCTACGTGCAACTATTGAGCGGCTAATCTTGGTTGCCTTTTCCAATGAGCCATATTTTAATAAAGATACATCACATCAATATAAAAAGTTTCAGCTGCTACTTTGTGCATCTGAGATCAGTTTACAAGGCAATGACCAAATTAAATGCATCAACTATGCCAAAGCTGCTTCCTCTATTTCACTTCCAGACAATTATCTTTTTTATGCACATTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAATGAATTCATAAAATGTTTGGATTTAAAGACAGATAACTATCTTGGATGGGTATGTCTTAAATTCATTGCATCTCGATATGAGCTTCATGTTGAATCCAATAGCTTAGAACTTAGTTTCAAGAAAGGAGCAGTAGAGAGCAAGGATCTGCAACATATGGTAATACCCATGTCTGGTCTGGTGGATGGTTTGATATCTTTTTGGAGCCAGGATTTTATGGCGGCTGAGAAGTATTTTGCTCAAGCTTGTTCCTCGGGACATGATGATGGCTGTCTCCTCCTCTGTCATGGTGTAACCTGCATGGAACTTGCAAAGCAGCTTTGCAGTCCTCATTTCTTGAGGCTGGCTGTGAACAGCCTCCTTAAAGCTCAAGTAATTTCCGTTGTTCCAATACCAATGGTCTCGATCACACTGGCTCAAGCAGAAGGGAGTCTTGGTTTGAAAGAAAATTGGGAATCAGGCCTTCGTTTTGAATGGTTCTCGTGGCCACCAGATATGAGGCCTGCGGAGCTCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCGAAAGTTGGTCCTGATCAGTTGAGGGTTGAGTTTTGTCAGTCTCCTCTGAGATGGGTTCTTCGCGCAATCCATGTAAACCCTTCTTGTATGAGATATTGGAAGGTGCTGCAAAGCTTGTGGAATGAGGGCTGA 3651 43.47 MVKETECCDVPGLSPAATEPEIVKAYHIEEEVAVEKDHVRESGTPCITSRQLQDTVNAHPDDPSSHFKLGIFLWENGGSHDKAVAADHFLKSAKLDPQNAAAFKYLGDYYATFSVDIERALKCYQRAVSLDVHDFHSGEALCDLLHREGKESLEVAICKEASSKSTRAFWAFRRLGYLQVFQKKWTEAVLSLQHAIRGYPSCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWVESGNIFLMLGLFKKGVEHFQRALEISPKSITAQFGLSSGLLGLAKECINRGAFKWASFLLEEASKVARGSTYLAGNLSCIWKLLGDIQHTYAKCYPWMEEDWGLCAESFRTSILSWKQTRSLALLSAKCSYQQALHLAPWEANIYTDIAITLDIISTLNGDSGSEFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHDALKQHAFIRALQLDGSMAGAWAYLGKLYRNRGEMQLARQAFNYARSIDPSLAIPWAGMSADLNTSESTSDEAFESCLRAASILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTTSHFSDRVPRSHVRNISINLARSLCMVGNFFEASQEYENLSKEGMLDIEGLQVYAFSLWKLGKNDQALSTVRTLASCISTMEKTRTAASVGFICRLLYSISGLDSAINSIMKMPTHFFRSSKVGFVVAAIHAIDGCDRLDSIVLSCRSCLQSHEEITKMHILIALSKLIKHQTDNCLGFHSGVMHLRKALHAYPNSSLMRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKGLKSAYEIHGAGAVSCYTIGTSHPRFSFPTCSCQCQNGIGTIRQLQKCLRQDPWNYDARYLLILNILQKAREERFPCHLRATIERLILVAFSNEPYFNKDTSHQYKKFQLLLCASEISLQGNDQIKCINYAKAASSISLPDNYLFYAHLLLCRAYAAENDSNNLRNEFIKCLDLKTDNYLGWVCLKFIASRYELHVESNSLELSFKKGAVESKDLQHMVIPMSGLVDGLISFWSQDFMAAEKYFAQACSSGHDDGCLLLCHGVTCMELAKQLCSPHFLRLAVNSLLKAQVISVVPIPMVSITLAQAEGSLGLKENWESGLRFEWFSWPPDMRPAELLFQMHLLAKQSKVGPDQLRVEFCQSPLRWVLRAIHVNPSCMRYWKVLQSLWNEG 1216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36009 57155 - Carg08590-RA Car09g00007 153744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00007 1216 Pfam Tetratricopeptide repeat 208 270 - -
Car09g00007 1216 ProSiteProfiles TPR repeat region circular profile. 203 233 - -
Car09g00007 1216 ProSiteProfiles Rhodanese domain profile. 127 194 IPR001763 -
Car09g00007 1216 ProSiteProfiles TPR repeat profile. 203 236 IPR019734 GO:0005515
Car09g00007 1216 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Car09g00007 1216 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00007 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 2093.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00007 Car-Chr9:36009 Car12g00796 Car-Chr12:7640442 1.20E-06 dispersed
Car09g00007 Car-Chr9:36009 Car10g00894 Car-Chr10:5657490 3.53E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g17 . Blo12g00835 . Bda03g00340 . Bpe04g00300 Bma04g00309 . . . . Cma09g00007 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0003 . Csa04g02754 . . . . . . . . . . . . Cmo09g00008 . . . Car09g00007 . . . . . . . . . . . . . . . . . . . Cme07g00008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00007 Car_Chr09 FPKM 10.842794 12.120721 13.477747 13.956538 17.706196 17.411079 19.470377 19.469402 17.603947 20.225534