Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00008 ATGAATAAGGGAATGATGAGCGGCAAACCCAATTTGAGGAAGACTAGAACTTTTTTCCTGCACAAGAACCAAACCTCGATGCAGCAGGCAATCATTCCGAACCAACCAGCTGAATCCGGAGAAGAGCATAATAATCATTATATTGAGAAAGAGAGCCCCCCGGGGGCGGTGAAATTCCCAGTGTCCCCTCAGCTGATGAATGGGGAACAGATGGTCCATTTCAGTCACCCTCGACACCGCCTGTCCCGGATGTGTAATCTGAACCTGTTTACGTGCGGCGGGTGCAAGGAGTACGGCGCCGGCAACGGATTCAGTTGCCAACAATGTGATTTCCAGCTCCACGACTTCTGCGCCTTCTCCCCTCCGGCCCTCAAGGCCCACCCCTTCCATTCCCACCACCAGCTTCTCTTTTACTCCAAGCCAGTGAAAGGGGGCATCATGCAGTCCAAGTGCGACATTTGCGCGAAGCCCATAAAAGGATTTGCGTTCCGATGCGGGGTGTGCAGCTTCCAGATGCACCCTTGCTGCGCGATGCTGTCCTTGGAAATGAAGATGCCATCGGTGCACCCGCACCCGCTGAGGATGCTGGGAGCAACAACATCATCAGTAGTGGAGCAGCCGAGCAGCTTGGTGGGGTGCGGGGAGTGCAAGAGGAGGAGGTCGGGGAGGGTGTACCGTTGCACGGTGTGTGATTATCAGGTGCATGCAGTGTGCGCAAAGAGCGTGAAAAACGGCCTCCGGGAGAAGGGGTACAAGGAAACAGAGAAGGCCAGCGTGCTTGGGACTGCCGCAAGACTCGCTTCTCAGGTGGTGGTTGAGTTCTTGGGAGGCATCATCGAGGGCCTCGGAGAAGGGGTTGGCGAAGCCTTAGTCCAGAACATCAACGGCAAGGCCGCCCCCACACCTCTTCATCATCGTTAA 921 55.59 MNKGMMSGKPNLRKTRTFFLHKNQTSMQQAIIPNQPAESGEEHNNHYIEKESPPGAVKFPVSPQLMNGEQMVHFSHPRHRLSRMCNLNLFTCGGCKEYGAGNGFSCQQCDFQLHDFCAFSPPALKAHPFHSHHQLLFYSKPVKGGIMQSKCDICAKPIKGFAFRCGVCSFQMHPCCAMLSLEMKMPSVHPHPLRMLGATTSSVVEQPSSLVGCGECKRRRSGRVYRCTVCDYQVHAVCAKSVKNGLREKGYKETEKASVLGTAARLASQVVVEFLGGIIEGLGEGVGEALVQNINGKAAPTPLHHR 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 58477 59544 + Carg08591-RA Car09g00008 153745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00008 306 Pfam C1 domain 128 177 IPR004146 -
Car09g00008 306 Pfam C1 domain 74 118 IPR004146 -
Car09g00008 306 Pfam C1 domain 188 239 IPR004146 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00008 - - - cmo:103493863 448.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00354 Car-Chr3:4449600 Car09g00008 Car-Chr9:58477 6.99E-07 dispersed
Car09g00008 Car-Chr9:58477 Car19g00639 Car-Chr19:7745388 9.21E-23 dispersed
Car09g00008 Car-Chr9:58477 Car20g00746 Car-Chr20:4384745 2.43E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g23 Blo01g01659 . . . Bpe02g00284 . . . . . . Cma09g00008 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02438 Csa04g02751 . . . . . . . . . . . . Cmo09g00009 . . . Car09g00008 . . . . . . . . . Cla11g01864 Cam11g1933 Cec11g1958 Cco11g1972 Clacu11g2098 Cmu11g1900 Cre11g2309 . . Chy07g00440 Cme07g00010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012721 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00008 Car_Chr09 FPKM 11.215037 12.982673 1.29534 1.243238 1.020995 0.679473 0.711001 0.470727 0.361893 0.191757