Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00010 ATGGACGACGTCGGCGCCCAAGTTGCTCCTCCTATTTTCATCCGCCAAACCTTGACCAGTCGCTACACTGATGTGCCTTCCATCCCCAAGAAGCGTGCTTTATCATATCAGCTCCCCAACTTCCATCATCACTTGCAACCTCAGGGTCAACTCCATGCTCATACTTGGAACCCTAAGGCTTGGGATTGGGATAGCGCTAGATTCCTCACCAAACCCTCCAAACCTCCGCTTCTCCACTCCGATACTCCCTCATCCGACCTAAAGACCACCCACGATTTCGCTGCTGCTACTCCCTCCACGTTGAACAACACAGTGGAGTCTCTGGAGAACCAGGATGAGAGTCTTCGCCTTAATCTTGGTGGTGGTTTGAATTTGAATTACGTTGAGGAGCCCGTGTCCAAACCCCCTAAAAAGGTCCGCCCTGCTTCTCCCGGCGCTGCTACCACCTACCCTATGTGCCAGGTTGATAATTGTAAGGAAGATCTATCGAATGCCAAAGACTATCACCGCAGGCATAAAGTTTGCGAGCTCCATAGCAAATCCTCCAAAGCCCTAGTTGCTAAACAGATGCAGCGGTTCTGCCAGCAGTGTAGCAGATTTCATCCTCTTTCGGAATTTGATGATGGGAAGAGGAGTTGTAGGAGGAGACTTGCAGGGCACAACTGGCGTAGAAGGAAGACGCAGCCCGAGGATGTATCCTCAAGGCCGACCCGGCCAGGAAGTAGAGGACCCCAAAGCAGTGGGAATTTGGACATCGTCAGTCTATTGACTGCCCTAGCCAAGGCTCAAGGAAAAAACGAAGACCAGACTGTGAAGAGCTTGTTGTCAGCAAATAGTGACCATCTCATTCAGATCCTCAATAAGATCAACTCGCTTCCGTTACCAGCAGACCTTGCAGCAAAGTTGCCCAATTTAGAGAGTTTTAGGGGGAAGGCTCCTCCACAAGGTTCGTTGCAGCACCAAAACATATTAAATGGAAATTCATCTTCTCCGTCGACCATGGACTTGCTTACTGTACTTTCAGCTACTTTAGCAGCATCGGCTCCAGATGCTCTTGCAGTGCTGTCGCAGAAGAGCAGTCTCAGCAGTGATAGTGAAAAAACACGGTCATCGTGCCCATCTGGTTCTGATCTCCACAATAGGCCTCTGGAACTTCCTTCAGTTGCAGGAGAAAGAAGCAGTACCAGTTATCAGTCTCCCATGGAAGATTCGGATGGACAAGTTCAAGGAACTCGAGTTGGTTTGGCACTCCAGCTGTTTAGCTCTTCGCCTGAACATGATACCCCACCGAACTTGGCGGCTTCTAGGAAGTACTTTTCTTCTGATAGCAGTAATCCTATTGAAGAGAGGTCTCCGTCATCTTCACCTCCTCTCCTGCAGAAGTTGTTTCCCATGCAAAGCAGAGAAGAAGCGAACAGTAATGGGAAATTACCAATCAGAAAAGAAGTTAGTGGTGTTGAGGTTCGAAAGCCTCCTAGTAGCAATATTCCCTTTGAACTCTTCAGAGAGTTAGATGGAGCTGGACCAAATTCATTTCGACCTGTTCCATATCAGGCTGGATACACTTCTTCAGGGTCTGATCATTCACCTTCTAGTTTAAATTCTGATGCCCAGGACCGCACTGGAAGGATAAGTTTTAAACTCTTTGACAAGGATCCCAGTCAATTTCCAGGGGCATTGCGGACACAAATATACAATTGGCTGTCTAATTGTCCGTCTGAAATGGAAAGCTACATCCGGCCTGGTTGTGTGGTTCTGTCGGTTTATCTGTCTATGACACCCATTGCATGGGAACAGCTTGAAGAAAATTTGGTTCTGCATCTTAAATCTTTGATTCATAGCGAAGAGATTGATTTTTGGAGAAGTGGAAGATTTCTAGTTTACACTGGGAGGCTACTGGCGTCACACAAGGATGGTGAGAACTTACCAGGCGTGGTCCTTGAAACCATAGGGAAGATTCGTCTGAACAAATCCTCAAAAGCATGGAGTAATCCAGAATTAATCTCGGTGTCACCTTTAGCAGTTGTGGGTGGACAAAAGAACTCCTTTTTATTGAGGGGAAGGAATTTGAAAAGTCCTGGCACCAGGATTCATTGCACATCTATGGGTGGCTACATATCCGAAGAAGTGATGGGATTCTGTAGGCAAGGAATATACGACGAGATACACTCCAGAAGTTTCAAGGTTGGGGATGCATCACCTACTGCCCTTGGTCGTTGTTTCATTGAGGTGGAAAATGGTTTTCGAGGAAATAGTTTCCCTGTTATCATAGCTGATGCTGCCATCTGTAAGGAATTGCGGCATCTTGAATCGGAGATTGATGGGTTTAGAGTACCTGAAATTAGTTCAGAAAGTCATTCATACGTTACTTCACAGCCAAGGCCAAAGGATGAAATTTTGCTATTCTTGAATGAACTTGGATGGCTATTCCAAAGGGAAAGATCGTCTTCTGGCTTAGATAATCCAGATTTTTTAATAAGGCGGTTCAAATTTGTACTCGCGTTCTCAGCAGAGAGGGACTTCTGTGCGTTGGTTAAAACACTTCTTGACATTTTGGTAAAAAAGTGCTTGATCACACATGGACTATCAACGAAATCTTTGGAGATGATATCTGAGATTCAGCTCTTGAATCGATCAGTTAAAAGGAGGTGCAGGCGGATGGTTGACCTACTCGTTCATTATCACGTATCTGGCTTTGGTGATGCTGAGAAAAAGTACCTCTTTCCACCAAATTCTATTGGTCCTGGTGGCATTACGCCTCTGCATTTGGCAGCTTCAATGACAGATGCAGATGATATGGTTGATGCACTGACAAATGACCCGCTAGAGATTGGGTTGGAGTGCTGGAGTTCCCAACTTGATGCAAACGGACAGTCGCCACGGGCTTATGCTTTAATGAGGGGCAATCATTCTTGTAATGAGCTGGTGGAGCGAAAACTTGGTGACAGAAAGAATGGTCAAGTTTCGTTAAGAATTGGGAATGAGATAGAGCAACTAGAGGTGTCAAGTGGAGAGAGGGGCAGGGCGCAAGTTCGATCCTGCTCCAGGTGTGCTATTGTTGCAGCAAAGTGCAACAGGAGGGTTCCTGGGAGTGGGACACACAGGTTACTTCATCGGCCCTACATTCATTCAATGCTTGCTATTGCTGCAGTGTGCGTTTGCGTGTGCCTATTTTTGCGAGGTTCCCCGGACATTGGTTTAGTTGCACCCTTCAAATGGGAGAACTTGGACTATGGGACAATATAA 3246 46.52 MDDVGAQVAPPIFIRQTLTSRYTDVPSIPKKRALSYQLPNFHHHLQPQGQLHAHTWNPKAWDWDSARFLTKPSKPPLLHSDTPSSDLKTTHDFAAATPSTLNNTVESLENQDESLRLNLGGGLNLNYVEEPVSKPPKKVRPASPGAATTYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSSKALVAKQMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQPEDVSSRPTRPGSRGPQSSGNLDIVSLLTALAKAQGKNEDQTVKSLLSANSDHLIQILNKINSLPLPADLAAKLPNLESFRGKAPPQGSLQHQNILNGNSSSPSTMDLLTVLSATLAASAPDALAVLSQKSSLSSDSEKTRSSCPSGSDLHNRPLELPSVAGERSSTSYQSPMEDSDGQVQGTRVGLALQLFSSSPEHDTPPNLAASRKYFSSDSSNPIEERSPSSSPPLLQKLFPMQSREEANSNGKLPIRKEVSGVEVRKPPSSNIPFELFRELDGAGPNSFRPVPYQAGYTSSGSDHSPSSLNSDAQDRTGRISFKLFDKDPSQFPGALRTQIYNWLSNCPSEMESYIRPGCVVLSVYLSMTPIAWEQLEENLVLHLKSLIHSEEIDFWRSGRFLVYTGRLLASHKDGENLPGVVLETIGKIRLNKSSKAWSNPELISVSPLAVVGGQKNSFLLRGRNLKSPGTRIHCTSMGGYISEEVMGFCRQGIYDEIHSRSFKVGDASPTALGRCFIEVENGFRGNSFPVIIADAAICKELRHLESEIDGFRVPEISSESHSYVTSQPRPKDEILLFLNELGWLFQRERSSSGLDNPDFLIRRFKFVLAFSAERDFCALVKTLLDILVKKCLITHGLSTKSLEMISEIQLLNRSVKRRCRRMVDLLVHYHVSGFGDAEKKYLFPPNSIGPGGITPLHLAASMTDADDMVDALTNDPLEIGLECWSSQLDANGQSPRAYALMRGNHSCNELVERKLGDRKNGQVSLRIGNEIEQLEVSSGERGRAQVRSCSRCAIVAAKCNRRVPGSGTHRLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTI 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 62352 67358 - Carg08593-RA Car09g00010 153747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00010 1081 MobiDBLite consensus disorder prediction 307 329 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 233 249 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 512 537 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 218 249 - -
Car09g00010 1081 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Car09g00010 1081 MobiDBLite consensus disorder prediction 421 460 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 516 537 - -
Car09g00010 1081 Pfam SBP domain 153 226 IPR004333 GO:0003677
Car09g00010 1081 MobiDBLite consensus disorder prediction 356 409 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 314 329 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 356 377 - -
Car09g00010 1081 MobiDBLite consensus disorder prediction 389 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00010 - - - cmax:111474399 2057.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00236 Car-Chr1:1308868 Car09g00010 Car-Chr9:62352 2.80E-37 dispersed
Car09g00010 Car-Chr9:62352 Car14g00872 Car-Chr14:5138923 9.21E-37 dispersed
Car01g01616 Car-Chr1:13252764 Car09g00010 Car-Chr9:62352 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4024 PF03110 SBP 3.70E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00010 Car_Chr09 FPKM 43.861496 49.127388 40.769562 42.499916 44.224377 39.947525 44.290848 42.964596 39.149441 36.448895