Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00017 ATGGCGGCTAATTTACCGGTCCAAGATCCCCCCACGGATGCTTCTGCCAAACAACCTACGCCTTCGCCTTCCCCCACTCTTGTAACCCCTCCCGTTAAGATCGACACTCCTTCATCCGACTCCGGCAAGACCCCCGCCGCCGTTCCCGCTCCTACCCCTCGCCCCGAGGACCTCCCTCAATCCGCCTCTCCCGATCCAGTTCATCTTCCCAGCTACTCCAGATGGTTCTCCTGGAACGGCATTCACGAGTGCGAGGTTCGGTTCCTTCCGGAGTTCTTCGATTCACGGTCGCCCTCTAAAAACCCTAGGGTTTACAAGTACCTTCGAAATGCTATTGTCAAGAATTTCAGAGAATGCCCTTCCAAGAAGATCACATTTACTGATGTCCGAAAGACGCTCGTTGCCGACGTAGGATCTATTCGTAGGGTTTTCGATTTTCTCGAGGCTTGGGGTCTCGTCAATTACTCGCCGTCCGCCCTGAACAAACCGCTCAAGTGGGAGGACCGGGACTCGAAGTCTAATTCGTCCGCTTCGCACACCGGTGAGCCTGGAGGTAGTTCCGCAGATTCCGCAGCTCCTAAAGACGCTTCTAAGAGAGTATGCAGCGGTTGCAAGTCTATTTGTAGCATCGCTTGCTTTGCATGCGATAAGTTTGATTTGACGCTTTGTGCGAGGTGCTATGTTCGTGGAAACTATCGAGTTGGTGTTAGTTCTTCAGATTTTCGACGTGTTGAGATCAATGATGAGACACGAACAGATTGGACTGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATCATGGTGATGATTGGAAAAAGGTCGCACAACATGTTGGTGGCAGAACTGAAAGGGAATGTGTTGCCCATTTTGTGAAGCTTCCTTTGGGGGAGCAGTTTCTTGGTTATCCAGATTCCGGAAATGTTGGTGGCAGAACTGTAGTGAAGGATCATGCCAGTGCCGATCTTACATTAGAAAGTACACCTCTTACTAGTAAAAGAATCCGTCTATCTCCTCTGGCAGATGCAAGTAATCCCATAATGGCTCAGGTTAGTGTTGGTGTTAGTCATTTCTTTTAG 1083 49.77 MAANLPVQDPPTDASAKQPTPSPSPTLVTPPVKIDTPSSDSGKTPAAVPAPTPRPEDLPQSASPDPVHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNAIVKNFRECPSKKITFTDVRKTLVADVGSIRRVFDFLEAWGLVNYSPSALNKPLKWEDRDSKSNSSASHTGEPGGSSADSAAPKDASKRVCSGCKSICSIACFACDKFDLTLCARCYVRGNYRVGVSSSDFRRVEINDETRTDWTDKETLHLLEALTHHGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFLGYPDSGNVGGRTVVKDHASADLTLESTPLTSKRIRLSPLADASNPIMAQVSVGVSHFF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 104899 106732 - Carg08600-RA Car09g00017 153754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00017 360 Pfam Myb-like DNA-binding domain 252 295 IPR001005 -
Car09g00017 360 MobiDBLite consensus disorder prediction 31 45 - -
Car09g00017 360 ProSiteProfiles SANT domain profile. 249 300 IPR017884 -
Car09g00017 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 288 IPR017930 -
Car09g00017 360 MobiDBLite consensus disorder prediction 1 65 - -
Car09g00017 360 ProSiteProfiles SWIRM domain profile. 67 164 IPR007526 GO:0005515
Car09g00017 360 Pfam SWIRM domain 70 155 IPR007526 GO:0005515
Car09g00017 360 MobiDBLite consensus disorder prediction 170 193 - -
Car09g00017 360 ProSiteProfiles Myb-like domain profile. 246 296 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00017 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101219016 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00017 Car-Chr9:104899 Car10g00036 Car-Chr10:159720 7.32E-43 dispersed
Car09g00017 Car-Chr9:104899 Car09g00686 Car-Chr9:4026463 4.73E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00017 Car_Chr09 FPKM 8.521876 6.906363 9.124573 8.84754 10.499846 10.043254 10.606717 10.780496 9.679859 9.985698