Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00041 ATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAGGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA 450 46.89 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 204260 205862 - Carg08624-RA Car09g00041 153778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00041 149 MobiDBLite consensus disorder prediction 60 91 - -
Car09g00041 149 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 41 110 IPR009071 -
Car09g00041 149 SMART hmgende2 40 111 IPR009071 -
Car09g00041 149 Gene3D High mobility group box domain 24 129 IPR036910 -
Car09g00041 149 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Car09g00041 149 Coils Coil 92 112 - -
Car09g00041 149 MobiDBLite consensus disorder prediction 111 149 - -
Car09g00041 149 Pfam HMG (high mobility group) box 41 110 IPR009071 -
Car09g00041 149 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 148 - -
Car09g00041 149 SUPERFAMILY HMG-box 28 115 IPR036910 -
Car09g00041 149 MobiDBLite consensus disorder prediction 1 18 - -
Car09g00041 149 MobiDBLite consensus disorder prediction 1 45 - -
Car09g00041 149 MobiDBLite consensus disorder prediction 127 149 - -
Car09g00041 149 CDD HMGB-UBF_HMG-box 41 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00041 K25507 HMGBP; high mobility group B protein, plant - csv:101203891 191.815
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01588 Car09g00041 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00142 Car-Chr2:826501 Car09g00041 Car-Chr9:204260 1.48E-30 dispersed
Car03g00309 Car-Chr3:4161362 Car09g00041 Car-Chr9:204260 5.10E-33 dispersed
Car06g00131 Car-Chr6:819217 Car09g00041 Car-Chr9:204260 6.19E-53 dispersed
Car07g01039 Car-Chr7:6009367 Car09g00041 Car-Chr9:204260 9.71E-42 dispersed
Car09g00041 Car-Chr9:204260 Car16g01202 Car-Chr16:10151240 6.37E-44 dispersed
Car01g01588 Car-Chr1:13148756 Car09g00041 Car-Chr9:204260 5.22E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g85 . Blo12g00851 . Bda03g00323 Bpe02g00306 Bpe04g00284 Bma04g00290 . . . Cma01g02021 Cma09g00049 Car01g01588 . . Cpe06g00019 . . . . . . . . . . . . . . . Cone4ag2024 Cone7ag1941 Cone17ag1458 . Lsi04g01812 Csa04g02709 . . . . Bda11g00975 . . . . . Sed01g2431 Cmo01g02078 Cmo09g00052 . . . Car09g00041 . . Bhi09g02874 Tan01g5116 Cmetu06g2583 . . Mch11g0052 . Cla11g01828 Cam11g1895 Cec11g1920 Cco11g1929 Clacu11g2059 Cmu11g1864 Cre11g2271 . . Chy07g00398 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002005 3 3 2 2 2 0 4 1 0 2 2 1 3 2 2 3 0 5 2 1 2 2 2 2 2 2 2 2 1 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4028 PF00505 HMG_box 4.50E-23 CL0114 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00041 Car_Chr09 FPKM 29.407408 32.865253 25.409969 24.984821 20.81497 18.189396 17.173479 19.085388 20.200645 22.885817