Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00053 ATGCAGAGACAGATTGTCGATGCACTTCGAGTGGGTGATAGAAGTAGTGCTTCCAATCTGCTCATGGAACTTGGCCAGGAAAAACACTCCTTAACTGCAGATAATTTTGTTGGCATTTTGAGCTACTGTGCAAGATCACCTGATCCACTGTTTGTCATGGAAACTTGGAAAATAATGGAAGAAAGAGGAGTTTTCCTGGATAACACATGCACTTTACTTATGATAAAAGCACTCTGTAAGGGCGGTTACTTGGATGAGGCATTTGGTCTAATAAGTTTCCTGGGAGAAAGTCGTGTCATGTTTCCTGTTCTGCCTGTGTACAATCTTTTCTTGAGAGCCTGTGGCAAAAGGCAAAGTACGGTTCATGTTAGTCAATGTTTGGATATAATGGATCGCAGAATGGTCGGGAAGAATGAAGCTACATATTCTGAGCTACTCAAGGTTGCAGTTTGTCAGAAAAATTTGTCTTCTGTGCATGAAATTTGGACAGACTTTGTAAAAAATTACAGTCCAAGTGTCTTATCTCTAAGAAAGTTTATATGGTGTTATACAAGGCTGGGAGACCTAAAATCTGCACATACTGCACTGCAAAAGATGGTGGCTTTGGTTATTGGAGCCGCAGGACAAAAGTTACCCTCCTTAGAATTGGACATTCCTGTACCCTTAAGAACTGAATTCTATCATGACAATTTTAATTTCGAGGAAAATGGACCTTCTACCAACGAGGTATACTGTAAGAAAATGGTCCCCTGCGAAGGTGACATAGAGCAATTTTCTGTTAATGGTATGAAGTGTGGAGAAGTTGAAAGTGGTCGAACTTTGCCAAGCAATTACAGAAGCAATTTTGTTATGAAGGTTTTGAGGTGGTCTTTCAATGATGTGATATGTGCATGTGCGCTTACTAGGAACTGTGGTCTTGCAGAGCAGTTAATGCAACAGATGCATGAACTGGGATTGCAACCTTCGTCCCACACATTTGATGGTTTTGTTAGATCAGTTGTTTCAGAGAGAGGTTTCAGTGATGGCATTAAAATATTAAAAATAATGCAACAGAGGAAATTGAAGCCATATGATTCAACTCTTGCTGCTGTTTCGATAAGTTGTAGCAAGGCGCTAGAACTTGATTTGGCTGAGGCTCTACTCGAACAAATTTCAGCTTGTGTGTTCCCACACCCCTTCAATGCATTTCTTTCAGCATGTGACATGATGGATCAGCCAGAACGTGCCATGCGTATGTTGGTTAAAATGAAACAAATGGAGGTGCTTCCAGATGTGAAGACCTATGAGCTTTTATATTCATTATTTGGTAACGTGAATGCTCCATACGAGGAGGGCAACAGATTGTCACAGGTGGATGCTGCAAAAAGGATACGCATGATAGAGATGGATATGGAGAAACATGGGATACAACACAGTCATTTCTCTATGATGAACTTGTTGAAAGCTCTTGGTGCGGAGGGGATGACGAAGGAGCTTCTTCAGTATTTAAATGTGGCAGAGAACCTCTTCTATTACAATAACACTTGTCTGGGGACGCCTATTTACAACACAGCGTTGCATTTTTTAGTTGAATCCAAAGAGATCCATATGGCAATAGAATTATTCAATAATATGAAGCATTCTGGTCTCTTTCCAGATGCTGCGACATTTGAGATGATGATCAACTGTTGCAGTGTTATCGGATGCTTGAAATCTGCGTTTGCTCTTCTCTCCCTGATGATTCGCTCCGGGTTTTGTCCTCAGATATTAACTTATACCAGTCTAGTAAAGATTGTGCTGGGATTTGAGAGATTTGATGATGCCTTGAATCTCTTAGATCAAGCCAGTTCAGAAGGGATTGAACTTGATGTAGTTATAATGAATACAATCGTGCAGAAAGCTTGTGAAAAGGGAAGGATTGATGTGATTGAGTTTGTCGTTGAGAAGATGAAGCGCGAAAAGATCCAACCCGACCCTTCAACGTGCCATAGTGTCTTCTCGGCATATGTGAGCCTTGGCTATCACAGCACCGCCATGGAAGCACTGCAAGTACTGAGCATGCGTATGCTATGCAAAGAACACGACACTTCTCCAGTGGTTACAGAATATGTCGAAGACTTTGTGCTTGCAGAAGACTCCGAAGCGGAATCACGGATTTTGGAATTCTTCAAATGCTCTGAAGAGAGCCTAAGTTTTGCCCTTCTCAACTTGAGATGGTCTGCCATGCTGGGATATTCCCTTTGTTCCTCCCCTAATCAGAGTTCATGGGCAATGAGACTTGCAAGTTCCTATGATGATGGCTACACAGCCTAA 2292 41.67 MQRQIVDALRVGDRSSASNLLMELGQEKHSLTADNFVGILSYCARSPDPLFVMETWKIMEERGVFLDNTCTLLMIKALCKGGYLDEAFGLISFLGESRVMFPVLPVYNLFLRACGKRQSTVHVSQCLDIMDRRMVGKNEATYSELLKVAVCQKNLSSVHEIWTDFVKNYSPSVLSLRKFIWCYTRLGDLKSAHTALQKMVALVIGAAGQKLPSLELDIPVPLRTEFYHDNFNFEENGPSTNEVYCKKMVPCEGDIEQFSVNGMKCGEVESGRTLPSNYRSNFVMKVLRWSFNDVICACALTRNCGLAEQLMQQMHELGLQPSSHTFDGFVRSVVSERGFSDGIKILKIMQQRKLKPYDSTLAAVSISCSKALELDLAEALLEQISACVFPHPFNAFLSACDMMDQPERAMRMLVKMKQMEVLPDVKTYELLYSLFGNVNAPYEEGNRLSQVDAAKRIRMIEMDMEKHGIQHSHFSMMNLLKALGAEGMTKELLQYLNVAENLFYYNNTCLGTPIYNTALHFLVESKEIHMAIELFNNMKHSGLFPDAATFEMMINCCSVIGCLKSAFALLSLMIRSGFCPQILTYTSLVKIVLGFERFDDALNLLDQASSEGIELDVVIMNTIVQKACEKGRIDVIEFVVEKMKREKIQPDPSTCHSVFSAYVSLGYHSTAMEALQVLSMRMLCKEHDTSPVVTEYVEDFVLAEDSEAESRILEFFKCSEESLSFALLNLRWSAMLGYSLCSSPNQSSWAMRLASSYDDGYTA 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 264786 270152 + Carg08636-RA Car09g00053 153790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00053 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Car09g00053 763 Pfam PPR repeat family 514 557 IPR002885 -
Car09g00053 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Car09g00053 763 Pfam PPR repeat 290 319 IPR002885 -
Car09g00053 763 Pfam PPR repeat 74 92 IPR002885 -
Car09g00053 763 Pfam Pentatricopeptide repeat domain 393 437 IPR002885 -
Car09g00053 763 Pfam Pentatricopeptide repeat domain 604 654 IPR002885 -
Car09g00053 763 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00053 - - - cmax:111476573 1471.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00053 Car-Chr9:264786 Car07g00958 Car-Chr7:5428599 5.70E-06 dispersed
Car09g00053 Car-Chr9:264786 Car12g00660 Car-Chr12:4461738 8.75E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00053 Car_Chr09 FPKM 17.325607 16.073524 2.651754 2.689448 2.626705 2.93721 2.828857 3.036976 2.907922 2.630642