Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00060 ATGGCGGTCTACGGCGGCGACGTTCCCGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACGAAAATCTTCCACAGCAAACGCCGCCCAATCCCGCTTCCCCCTAATCAATCCCTCGATGCGACGACGTTTATCTCATCCCGCCCCCACAACGGAAAAATCGCCCTTATCGACGCCACCACCGGCCAACACATCACCTATTCCCACCTCTGGGAGTCTGTCGACTCCGTAGCCTCCTCTCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCCATTTTCTTCCCCATTATTTGCCTCGCTGTCATGTCCCTCGGCGCCGTCATCACCACCACAAACCCCCTCAACACCCCTCAAGAAATCGCCAAACAGATCGCCGATTCCAACCCCATCTTAGCCTTCACCACCCAACAACTAATCTCCAAAATCGCCAGTTCCAAATTGCCAGTCGTTCTGATCGACGGTGAAACTCAAATTAAAAAATTCTCAGTCAAAATCGTGTCGACGCTGAGCGAAATGATGAGGAAAAAATCCAGTGGAAGTCGAGTTAAGGAGCGTGTGGACCAAAACGACACAGCGACTCTGCTTTACTCCTCTGGAACGACAGGGGCCAGCAAGGGCGTAGTGTCGTCTCACAAGAATCTAATTGCGATGGTTCAGGTCGTTGTGACGAGGTTCAAATTGAGCGAAGGGGAAGGGACTTTTATTTGTACGGTTCCGATGTTCCATATTTACGGCCTTGTGGCTTTCGCTACGGGGCTGCTCTCTTCTGGATCGACAATCGTCGTCTTGTCCAAATTCGAGATTCATGAAATGTTGTCGGCGATTGAGAAGTACAGAGCCACGTATCTGCCTCTTGTGCCGCCGATACTGGTGGCGATGGTGAACGCTGCCGAGAAGATAAAAGGAAAGTACGATTTGGGGTCGTTACACACGGCGTTGTCCGGCGGAGCGCCGCTCGGGAAGGAGGTGATTGAGGGTTTCGTTGAGAAGTATCCAAATGTTTCCATTCTTCAGGGATATGGATTGACGGAGTCCACAGGAATTGGGGCGTCCACCGATTCTCTGGAGGAGAGCCGCCGGTACGGCACGGCAGGGCTTCTATCGCCGAGCACCGAGGCCAAGATTGTTGACCCGGACACCGGCGAGGCTCTGCCTGTGAACAGAACCGGAGAGCTCTGGCTCAGAGGGCCCACCATCATGAAAGGGTATTTTGGTAATGTGGAGGCCACCACCTCAACGCTTGATTCTGAGGGATGGCTGAGAACCGGCGATCTATGTTACATTGATGAAGATGGTTTTATTTTTGTGGTTGATCGCCTTAAAGAACTCATCAAATATAAGGGCTATCAGGTGCCTCCCGCAGAATTAGAGGCATTGTTGCTCACTCATCCCAGTATCTCTGATGCAGCTGTAATTCCATATCCAGACAAAGAGGTTGGACAGTATCCAATGGCCTACGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGATATAATGCAATTCGTGGCAAGACAGGTGGCACCGTACAAGAGAATCCGGCGGGTTGCGTTCGTGGATTCCATTCCCAAGAACCCCTCCGTTCCCGGGTCCACTTTCCCTTTTCCGTTCTTTAGAGATAGGCCACTTGCCGTCGGGAAGATTTCGCCGGTGGTGTATTGTGATTCTCGTCGACATTCATTTCCGTCGGTGCCGGTTCTTTTTTCCGTTGCTTGTACTATTTTTTCGTCTGAAGAGCTGCAGCTGAATAGCATGGCGGACCATTCAAATGAAGGTTCTAGCACCAGCAGTATTTCCGGGGAGACTGCGACTTCGATTATTGAGCTGAAAATCAAGACTTTAGATTCACATATCTACAGTTTTCAAGTGAATAAAGATATGCCGGTTCAATTATTCAAGGAGAAAATCGCAAATGAAATAGGAATCCCAGTGAATCAGCAACGTTTGATATTCAGGGGAAAGCAACATGCAGCATCAGATACTAGCTCTGGCGAAAGACCTGCAAATGTACCTTCTTCAACCGGTAACGAAGCTGGAGTTGGTGCCCCTCGAAATCGACAAATTGCACATAGTGTTGTTTTAGGAACATTTAATGTTGGGGATCAAGGTGAAGGCATTGTTCCTGATCTTTCTCGGGTTATTGGGGCCGTTCTGAATTCTATTGGACTAAGCAGCCAAAATGCAAACATCCCACCTGGTATGCAGTCTACATTGCCTAACAATCGTGGCACAGCAAGTCAAGGAAATGAAACATTTAGAGCTAACAATGAGGCTGGAGGACAGGCAACGAGTCAAGCTCAAACTGGACAGGCATTTCCCAGCCAGCCATCACAAAGCTTTCCTCACGTGATTCAAATTCCACTTGCCAGTGCAGCCGTATCAGTTCCTTCCATTCATGCGCCCATTCCTGACGCTATGACAACACTTTCCGAGTTCATGAACCGTATGGAGCTTGCAATATCTCAGAATGGTGGAGATCTAACCAGGGTGGCACTGCCTACCAATCCACAAGGTTTACCAACCACTGAATCGTTGAGCATTGTCTTGCGTCATGCTCAACGGCTTCTAAGTGATTATGCCATATCTTCACTATCCCGTATTGCGGAGCGTTTGGAGCAAGATAGCTCTTCCACTGATCCCATTGTGAGGGGTCAAATTCAGGAAGAGTCGGTACAAGTAGGACTTCGGATGCAACAATTTGGTGCGCTTCTTTTGGAACTGGGCCGTACCATCTTGACACTCCGTATGGGACAATCATCTGCGGAGTCGGTTGTTAACACTGGCCCAGCAGTGTATATCTCTCCTACGGGGCCAAATCCCTTAATGGTTCAGCCTTTCCCCCTTCAAACTAATCCCCTCCTTGGTGGTGCTGTACTACCATCAAACCCAGTTGTTGGTGCAGTAGGTATTGGAACTGCCCCTAGACACATCAACATTCACATACATGCTGTTGGTACCAGGTCAAATAATGGGGAGGGAGCACCTGCAGATCGTCAGAATGTGGTCAGTGGATCCACGGATTCAGGTGTAGCCCAGGCACCTCCTGTTGTCAACATTCCACATCCGCTGGGTGTTTCCATTTCTGCTGCTGTGCAACCTGGTGAAGGTGTTTCTTCTTCCCAGCCTTCTCTTGACTCTGTTTTGTTATCCTCCATTATTGCTGATAATTCTTCTATTGGTTCTGGACAAGGGAGTGAACAGCAAAGTGATACTAAAAGGGACATGGGTGGAGAGTCGAGCGAGTCATTACCTGGGCGTGATTCGGAAACTGGAAATGACAAGATCGTCACAGACAATATTTATCGAGATACAGGAAGGTCTATAAGCACACCTGATTTACCAACATGCTCTGGTAGTAAGGGCTCTGAATTTGTTGGAAGAAATGAAGAAAATTTTCAGAGTCAGGCATCTTGTGAGAAGAGCACGGGAACTGGGTCTTCTCAAGCTGTTCCACTTGGACTTGGACTGGGGGGTTTGGAACGACCGAGGAGAGGCAAGCAGCAAACTTCACAGGCTAAAGGGGGTAGCAGTGGAACCAGCCACAGCCAGGGTCATACAGGCCAGCAGTTTTTACAATCTCTTGCCTCTAGTGCTTCTATGAATAGGTCAAATGCTTATGATCCCACAAGCCTACAACAGACCGCTAGCCCAACTGTTCATAGCAGATCCTTGCATGGTCCAGGTTCTAACAGCCAAATTGATCTAGGAAGCAGTATGTCTCAAGTTTTGCAGAGTCCTGCTTTAAATGGACTATTGACAGGGCTTTCAGAGCAAACTGGCGCTGGTTCTCCTGATGTCTTGAGGAATATGTTGCAACAGATCACGCAAAGCCCTCAAATGAGAAACACAGTCAATCAAATTGCCCAGCAGGTTGACCCCCAAGATCTTGAGCAAATGTTTGCTGGGTCGGGAAGAGGCCAAGGCGGTGGTATCGATTTGTCAAGGATGTTCCAACAGATGATGCCTATTGTCTCTCAAGTGCTTGGAGGATCGCCAAGGCAACCATCTTCCTCAAACATGCAACGATCGCCAAGGCAACCACCTTCGTCAAACCTGGAAAGCGAGCAAATGCCTCATAGTGAGAGATCTGGTAGTGGAGTGGAAACATCTAATGGCCAAAATTCTCAGATTGATGCCCAAGATCTTGCTCGAAGGATCATATCTACCAATTCGCCAAGAGACGTCTTCCGTGCTGTCGTTGAGAGTTCAGCTCGACTTTCTGGCAGTAGTAGCGAGGATATTGCAAATGAGTTGTGCAGCGATGAGACACTTGCTAAGCCCTTTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTCACCAACAATCCTGGAGAAATCTCCAAGGGTTCGAACTCCCCACCAATCCTCAACAACTGCAAACCACTAAATCTCTGGGTGTTGTCTTGCGAAATGCACAGCAACTCCTCGCGCATTGCCGAGCGATTCGAGGAAGAAGGCTCTTCCACTGACCCCACAGTGAGGGGTCAAATACAAGAAGAGTTAGTACAAGTAGGTCTTAGGATGCAACAATTTGGAGCACTTCTTCTCGACCTTGGCACTTCAATCTTGGCGCTCCGTTTGGAACAGTCAACCATTGACATCCAAGATGTTGGTCGAAGGGTTATTTGTAGCAATTCCCCAATGGATGTGTTTCGCGCTGTGGTAGAGAGTTCAGCTCAAATTTCTGGGAGTAGTAGTGAAGATATTGCTAATGAGTTGTGCACCCACGACACACTTGCTCAGGAATATTTAGAGATGTTATCAACTGATATAAACCGACGCTTACAAACCACTTCAGAACACCAAAATTAA 4860 48.68 MAVYGGDVPEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWESVDSVASSLSDMGIRKGHVILLLSPNSIFFPIICLAVMSLGAVITTTNPLNTPQEIAKQIADSNPILAFTTQQLISKIASSKLPVVLIDGETQIKKFSVKIVSTLSEMMRKKSSGSRVKERVDQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYRATYLPLVPPILVAMVNAAEKIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVSILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEAKIVDPDTGEALPVNRTGELWLRGPTIMKGYFGNVEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDIMQFVARQVAPYKRIRRVAFVDSIPKNPSVPGSTFPFPFFRDRPLAVGKISPVVYCDSRRHSFPSVPVLFSVACTIFSSEELQLNSMADHSNEGSSTSSISGETATSIIELKIKTLDSHIYSFQVNKDMPVQLFKEKIANEIGIPVNQQRLIFRGKQHAASDTSSGERPANVPSSTGNEAGVGAPRNRQIAHSVVLGTFNVGDQGEGIVPDLSRVIGAVLNSIGLSSQNANIPPGMQSTLPNNRGTASQGNETFRANNEAGGQATSQAQTGQAFPSQPSQSFPHVIQIPLASAAVSVPSIHAPIPDAMTTLSEFMNRMELAISQNGGDLTRVALPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSRIAERLEQDSSSTDPIVRGQIQEESVQVGLRMQQFGALLLELGRTILTLRMGQSSAESVVNTGPAVYISPTGPNPLMVQPFPLQTNPLLGGAVLPSNPVVGAVGIGTAPRHINIHIHAVGTRSNNGEGAPADRQNVVSGSTDSGVAQAPPVVNIPHPLGVSISAAVQPGEGVSSSQPSLDSVLLSSIIADNSSIGSGQGSEQQSDTKRDMGGESSESLPGRDSETGNDKIVTDNIYRDTGRSISTPDLPTCSGSKGSEFVGRNEENFQSQASCEKSTGTGSSQAVPLGLGLGGLERPRRGKQQTSQAKGGSSGTSHSQGHTGQQFLQSLASSASMNRSNAYDPTSLQQTASPTVHSRSLHGPGSNSQIDLGSSMSQVLQSPALNGLLTGLSEQTGAGSPDVLRNMLQQITQSPQMRNTVNQIAQQVDPQDLEQMFAGSGRGQGGGIDLSRMFQQMMPIVSQVLGGSPRQPSSSNMQRSPRQPPSSNLESEQMPHSERSGSGVETSNGQNSQIDAQDLARRIISTNSPRDVFRAVVESSARLSGSSSEDIANELCSDETLAKPFPPPPPPPPPPPPPPPPPFTNNPGEISKGSNSPPILNNCKPLNLWVLSCEMHSNSSRIAERFEEEGSSTDPTVRGQIQEELVQVGLRMQQFGALLLDLGTSILALRLEQSTIDIQDVGRRVICSNSPMDVFRAVVESSAQISGSSSEDIANELCTHDTLAQEYLEMLSTDINRRLQTTSEHQN 1619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 292585 307665 + Carg08643-RA Car09g00060 153797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00060 1619 MobiDBLite consensus disorder prediction 662 692 - -
Car09g00060 1619 ProSiteProfiles Ubiquitin domain profile. 616 663 IPR000626 GO:0005515
Car09g00060 1619 MobiDBLite consensus disorder prediction 750 787 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1431 1469 - -
Car09g00060 1619 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Car09g00060 1619 MobiDBLite consensus disorder prediction 995 1022 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1001 1021 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 665 689 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1103 1158 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1173 1244 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1434 1458 - -
Car09g00060 1619 Pfam AMP-binding enzyme 50 454 IPR000873 -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1065 1244 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1065 1079 - -
Car09g00060 1619 MobiDBLite consensus disorder prediction 1336 1385 - -
Car09g00060 1619 Pfam AMP-binding enzyme C-terminal domain 463 536 IPR025110 -
Car09g00060 1619 Pfam Ubiquitin family 618 664 IPR000626 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01572 Car09g00060 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01571 Car-Chr1:13062162 Car09g00060 Car-Chr9:292585 4.35E-13 dispersed
Car01g01572 Car-Chr1:13071467 Car09g00060 Car-Chr9:292585 0 dispersed
Car04g01470 Car-Chr4:8519237 Car09g00060 Car-Chr9:292585 7.06E-144 dispersed
Car05g01166 Car-Chr5:11108023 Car09g00060 Car-Chr9:292585 2.57E-48 dispersed
Car09g00060 Car-Chr9:292585 Car13g00641 Car-Chr13:8005520 5.53E-155 dispersed
Car12g01130 Car-Chr12:10999881 Car09g00060 Car-Chr9:292585 3.80E-51 dispersed
Car17g00065 Car-Chr17:369165 Car09g00060 Car-Chr9:292585 6.05E-18 dispersed
Car05g00206 Car-Chr5:1071837 Car09g00060 Car-Chr9:292585 6.84E-14 transposed
Car19g00158 Car-Chr19:1448505 Car09g00060 Car-Chr9:292585 1.88E-149 transposed
Car03g01311 Car-Chr3:10001897 Car09g00060 Car-Chr9:292585 4.41E-24 transposed
Car01g01570 Car-Chr1:13060043 Car09g00060 Car-Chr9:292585 1.62E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00060 K10526 - csv:101216180 1309.28