Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00069 ATGTCACCGCCGGCGAGGACCAAAAGCGGGAATGGCGGCCTAGATAAGCAGTATCCTCCGCCGCTTGCCACCCACGATGAAGTTGTTTCTGACCCCATTGTTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTACAAGAAGGGGCGGGCACGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAGGTGTCTTCAAGTTCTCTCCTACAACCACCAGTGCTTCCTTTGTATTGAGAAAACATTATCTCAGTCTTCTCTACCACTACGAGCAAGTTTACTTGTTCCGCCGCCAGGGCCCCATCTGCGCCCCTCAAGCGCCATTTTCTTTCGGTAGCCCTACCAGCGAAAACGAATTGGCTCTGGTGGAATATGCCCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTCACTGGAACAATTGATGGGAAATTCGATTGTGGCTACCTGGTGTCTGTGAAATTGGGATCTGAGGTTCTGAGGGGAGTTCTTTACCATCCAGAGGAGCCTACCCCGTCGGATCTCCGGCCACAACCTACCAACGCCATTGTACCGTACACTGGTACCACACATCGACACTCTGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGACCCCAACCACCCCAAACCAAACAGAAGTGGCTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCTAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAACCTCAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAGAGGTACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCTGGCAAGTGATGATGTTCATGCAGCTAACTATTCAAAACAGGGAGAGTAG 978 49.18 MSPPARTKSGNGGLDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGGVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFRRQGPICAPQAPFSFGSPTSENELALVEYAPKTTSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTTHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRLASDDVHAANYSKQGE 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 345113 347174 + Carg08652-RA Car09g00069 153806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00069 325 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Car09g00069 325 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Car09g00069 325 MobiDBLite consensus disorder prediction 213 244 - -
Car09g00069 325 MobiDBLite consensus disorder prediction 219 235 - -
Car09g00069 325 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Car09g00069 325 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Car09g00069 325 MobiDBLite consensus disorder prediction 1 23 - -
Car09g00069 325 Coils Coil 294 314 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01565 Car09g00069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00069 Car-Chr9:345113 Car14g00543 Car-Chr14:2986771 4.95E-07 dispersed
Car08g00902 Car-Chr8:6042778 Car09g00069 Car-Chr9:345113 5.34E-65 transposed
Car17g00085 Car-Chr17:496148 Car09g00069 Car-Chr9:345113 1.15E-79 transposed
Car01g01565 Car-Chr1:13029978 Car09g00069 Car-Chr9:345113 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4031 PF01388 ARID 4.30E-18 CL0123 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00069 - - cpep:111797158 627.091