Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00083 TTTCTTAGTCTTTTGGGAGAGATGGAGATTGGGTCCAATGGGGGATCAGACCAAGACCCACCTCCCAAAATGGAGGAACAAGAAGAGAAACCAAGCAAGAAGATAAGTGTTTCCTTTTTTGGTATGTTTGCTGCTGCTGATGCAATTGATTGTTTGTTGATGCTGTTTGGAAGCTTAGGAGCGTTTGTTCATGGGGCTGCTCTTCCTGTTTTCTTTGTTCTGTTTGGTCGGATCATCGATTCTTTGGGACATTTTTCCAGACATCCCCATACACTGTCTTCTCGTATTGCTGAAAATGCTTTATTCTTGATCTATCTTGGCCTCATTGTGTTGGCATCAGCATGGATAGGTGTGGCTTTTTGGATGCAAACGGGAGAGAGGCAGGCGGCAAGGTTGAGAATGAAGTATCTCAACTCAATTTTGAAGAAAGATATACACTTTTTCGACACGAAGGCCAAAGATTGCAACATAATCTTCCATATCTCAAGTGATATGGTTCTGGTTCAAGATGCGATAGGCGACAAGATAGGCCATGCTTTGCGTTATTTCTCCCAATTCGTTGTTGGGTTTGGCATTGGATTTACATCAGTTTGGAAACTGACGCTTCTGACTTTGGCCATTGTTCCATTGGTAGCCATTGCAGGAGGTGCATACACAATCATCATGTCCACTCTATCTGAAAAAGGTGAAGCTGCCTATGCTCAAGCTGGAAACACAGCTGAAGAGGTTATTGCACAGATTCGAACAGTGTACGCATATGTAGGAGAAAGTAAAGCCGTGGAGAAATATTCCGAGTCGCTTCAAAATGCATTGAAACATGGGAAGAGGAGTGGTTTTGCTAAAGGAATTGGCGTGGGGTTTACATACAGTCTTCTGTTTTGTGCCTGGGCTTTGCTCCTCTGGTATGCCAGCCTACTCGTCCTCCGCCACGAAACAAATGGAGGGAAAGCTTTTACGACGATCATCAATGTCATCTTCAGTGGATTGTAA 990 43.84 FLSLLGEMEIGSNGGSDQDPPPKMEEQEEKPSKKISVSFFGMFAAADAIDCLLMLFGSLGAFVHGAALPVFFVLFGRIIDSLGHFSRHPHTLSSRIAENALFLIYLGLIVLASAWIGVAFWMQTGERQAARLRMKYLNSILKKDIHFFDTKAKDCNIIFHISSDMVLVQDAIGDKIGHALRYFSQFVVGFGIGFTSVWKLTLLTLAIVPLVAIAGGAYTIIMSTLSEKGEAAYAQAGNTAEEVIAQIRTVYAYVGESKAVEKYSESLQNALKHGKRSGFAKGIGVGFTYSLLFCAWALLLWYASLLVLRHETNGGKAFTTIINVIFSGL 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 422282 423610 - Carg08666-RA Car09g00083 153820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00083 329 MobiDBLite consensus disorder prediction 11 32 - -
Car09g00083 329 Pfam ABC transporter transmembrane region 55 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car09g00083 329 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 55 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00083 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101221121 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00083 Car-Chr9:422282 Car04g02658 Car-Chr4:20709554 5.45E-23 dispersed
Car09g00083 Car-Chr9:422282 Car15g00274 Car-Chr15:1488023 1.51E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00083 Car_Chr09 FPKM 124.106186 144.090469 0.537515 0.724051 0.083785 0.049799 0.0 0.466916 0.165686 0.073933