Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00089 ATGGCTGGAGAATATAGGTTTGCAATGGACCAGAAGGACATTGTGAGATTATTGGTTGCCACCATTGATGATTTCACTCGAGGTCGCTTGATCAATAAAGAGCACAGGAACCTTCACAAAGAGCAATGTGCCGAGAGATTGGCAGCTGAAGACGGAAGCCATGACAAAGATACAGAGGTTAGGTACTCCGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTCTCAACACATCCAATATAGAAGCTAAGTTTGCACGGCTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTAAACTCTAACGAGAAAACTGCTGGAGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACCTAAATCTTTCTTATCTCTGGAAATTGCGAGGAAATGTTCACAACTCAGCCCTCCATATTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCATTGATTTTGCTCCTGAGCTCTGGAAAGAACTCTTTCTTCCACACATGAGTTCAATCGTTGGGTGGTACTCAGAGGAGAGGCACAGGCTTGTGATCGAAGTGATTCCTGATTCTTCTGATTTATCCTTCACAGCTGATATAGATCAATTCTTCAACGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGTGGAGAAATTACAGAAGTTGGAGAAGCTTTATGGAGAATCTTTGGACGAGAATTCGAGGCTCTTTGCTAAATACTTCAAGGACTGTATGAATTCTGATTCAAGCTCTACCAAGAAGGTTGCCCCGATGTTGCCAATCGCGGAGCCACCTATGACTCCTCTTCATGAAGTTAGCCGCTCAATTCCCGATTACATTAAATTTGGACCTATTTTACCCAAGAGTGCCGGCTTTTCGTCCATCTTGCTAAGATCTAAAGATGGTGCAACAGAAGCAAGCAGGCCAAAGGGGACTTCCAGTCCAGCCAAGAGCTCAGAGAAATTTGCAGGGCGGTATGCTCAGAATGATTCACTAGAGGAGATTGAGAACGATTCTGATCATGAACCTTTCGATTCTTACGAACTTAGCGATACCGTGACACATAAATTACTCTCACCTAGTAGCACAAGGACGTCAGAGGATGAGCAAATAGGACCTAAAGGGGAGACGTCGAAAATGGGGAGTTGCAAACATTCTCCCACCATTTTTTCTCCAATTTCATCTCCTTCAATCCCTTCACCGAAAGTCTTATCTCCAACAGCGAATGAGAAGTGTAAAAATGAATCTCGTTCTGCATTGCGACTGTTATCTAGTCGCTTCGGCGGGCAACGTGTTGCTACCTCTGTCCCCAGATCACCAGCTACAGGAAGCGATCACAGCTTCAGTCCAGTAGAGTCTGAGGGTGAAAAAGACCGCCACAGGAGAAGATATAGACAAAAGCACAATGCAATCTATAACGACGTGAGTAACCAAGACTTCGAGAATTGTTTAATCGATAAACTTGAGGAGGAAAGCAGAAGTCGTTCGTCTGAGATTATGACACATATAGTACGACCCCCTAAAGATTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGAGCCTGTTACTCTTGAAACTGGACAGACTTATGAAAGAAAAGCGATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGCCCCATTACACGGCAGCCATTGTCTTCAACTGTAATGCCTAAAATGAATTATGTCTTGAAAAGACTGATTACGTCTTGGCAGGAACAGCATCCTGATCTTGCTCAGGATTGTTCTTGGACTGGTACATCAGTAGTAAGTACTGTCAGTTCTTCCTTCAAAATGGCGAATTCTCTGGCATCTACTCCTTGCCGACCATTTCACATTCCTCTAAACAGTACTTTCGAGTCTCTTAACCAAAAAGGCAAAAGATTAATGCAAGAAGCAGTATCTTCATCGCCGACCAGTGTAATATCCCAGGCCACAGTCGAGAAAATCATTAACAGTTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAAAGCTTGAAACAATGTGAGACAGCTGTGCTCGCTATAGCAGGGTTTTGGAAGGACTCTAAAGGTGATTTAGCGGTCCATTCTTATTTATCCGAATTGGCTGTTGTGAACGGCTTTGTGGAAGTACTGTTAAATTCCCGTGAGAGAGAAGTCCTCAGAACCTCGATTTACGTTCTTTCGGAGCTTATTTGTGCTGATGGAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCTGATTTTGATTGCCTAGCTTCTTTGCTGACGAGTGGGTTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCTACATTTACTCAGTTGTCAGCTCATGACCTCATACCTTCCCTAGCCCAGATGATCCAGAAGAAAAATGAAGAATTTGATCATCTTCCGTTTGTAATAGAGCCAAAAAATGCTGCTATCGCAATGCTCGAACAGATTTTTATGGGAGGGGATGAAACTAGCCAGTCCAGGAATGCTGAGAGGTTTACCTCTGCTGAAGGAATCCCTGCATTAGTCAAGTTTTTGGGTAGGGTAGAAGTGAGGAGGCCAATACTTTCCATACTTTTATGTTGTATGCGGGTCGACCAAAGTTGCAAGGACTCAATAGTAGAGGAGATTGAGCTTGCTCCAGTTCTTGAGTTCCTTCATACTGGAAATGATGACGATAGAGGCCTGTGTGTGGCTTTTTTGTCAGAGCTGGTTCAGATGCACAGACGGACAAAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTCTTACATATCTTCAAATGGCTCCAATTGAGCAACAACCGGGCATTGCTTCTCTTCTTCTCCAGCTGGATCTCCTGACTGAACCACGAAGAATGAGCATTTACCGAGAAGAATCTATAGATGCACTGTTTGAAGCCTTTCGAAGAAAGGACAACTATAATTCTCAAATTGCAGCTGTAGATGCTTCATTATATCTATCTGGGCGATTCACTTCCTCGGGGAAGTCCTACACAAAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTGATGAAGGCCGAGGGACTGAGGAAGCCTGACTACGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAGTCAGCGTATGGGAGAAGAGGATAGCACTTGTTCTTTGTAACCATGAAAAAGGGTACATTTTTGAAGTTATGAAGGAATGCCTGAAGAGTAAATCATTAGAGATGACGAAGTCCTGTCTTGTCATTGTTTCCTGGCTCTGCCACATGGTTTCGACGCTCCCAGATACTGGAGTACAAGAGACTGCTCGCAGGTCCTTGCTTGATGAACTTGTAAACGTTCTCCAATCTTCTAACAGCCTGGAGGAGAAGATTTTAGCATGCCTTGTTTTGAAAACTTTCATTAGTGACCCAGCTGCACTTGAGGAACTGGGACTTCATGCAACATCCATCAACAAAACGTTGAGAAAGCTCAGGAGAAGCTCTTTGGTGGTCAATGATATAATGAAAGCCTTGATGAACGTGCCATCCGTTGATGCAACAGAGCTCTGGAGTTATACGGAAGTTGGTGCACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCCCTGGTTCATCTGAATGGGCGGGTCTTAAGCAGTCACTCGGACGGAACCATCAAGGTTTGGGATGCTGGAGATAAAGTATTGAAGTTGATCCAAGAAGCACGCAAGCACACAAAAGCTGTAACATGCCTGTGCGTTTCCTCTTCGGGCGACGCATTATACAGCGGTTCCTTAGACAAAACAATCCGGGTATGGACCGTCAAGTGTGAAAAAATACAGTGCGTCCAAGTTCATGAAGTGAAGGAGCCAATCTATGACATGAAAGCCAACGCCAATGTCGCATGCTTTGTTTCTCAAGGAACTGGCGTTAAGGTGTACAACTTCTCTGGAATTCCCAAGCATATAAATTTCAATAAATATGTCAAGTCCCTGGCATTATCAGAAGATAAACTTTATTGCGGTTGCTCTGGTGACTGTATAATGGAGGTGGATTTGACCAAACATACTACAAGCACATTCTATGCTGGCGTAAGAAAGTTGTTATGGAAACAAAACATCTACTCCTTACACTTACACGGGGACCTGCTGTTTGCTGCCGGTTCAGCAGTGGATGGAACTGCAGGCAAGACATTTTCGCTGTCGAACAAGACAACAGTGGGATCCTTTTCGCCTGGAGTTGACATCCATCACATGGCTGTAAGCACCGACTTGTTGTTTACAGCCTCGAGACTGGGCATGATTATAGAGGTCTTGTCGAAAGAAAAGTATACAAAAATTGGTTCAGTTAAATTAGGTAGTGCTAGTGGTAGCCACACAAAGATTACGTACCTAACTACAAATGATGATGGAGGATTGCTCTTTATTGGCACCTCTGGTGGAAAGATACAGGTTTGGGGTCTGATGGAATGA 4482 43.78 MAGEYRFAMDQKDIVRLLVATIDDFTRGRLINKEHRNLHKEQCAERLAAEDGSHDKDTEVRYSDQAVLANLDWGIEALEEALNTSNIEAKFARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSALHILEMFIVDPFFSRIDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADIDQFFNESLIFSLRPDQVEKLQKLEKLYGESLDENSRLFAKYFKDCMNSDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSILLRSKDGATEASRPKGTSSPAKSSEKFAGRYAQNDSLEEIENDSDHEPFDSYELSDTVTHKLLSPSSTRTSEDEQIGPKGETSKMGSCKHSPTIFSPISSPSIPSPKVLSPTANEKCKNESRSALRLLSSRFGGQRVATSVPRSPATGSDHSFSPVESEGEKDRHRRRYRQKHNAIYNDVSNQDFENCLIDKLEEESRSRSSEIMTHIVRPPKDFVCPITGQIFSEPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKMNYVLKRLITSWQEQHPDLAQDCSWTGTSVVSTVSSSFKMANSLASTPCRPFHIPLNSTFESLNQKGKRLMQEAVSSSPTSVISQATVEKIINSLKPFVSCLCNFESLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFVEVLLNSREREVLRTSIYVLSELICADGSVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIPSLAQMIQKKNEEFDHLPFVIEPKNAAIAMLEQIFMGGDETSQSRNAERFTSAEGIPALVKFLGRVEVRRPILSILLCCMRVDQSCKDSIVEEIELAPVLEFLHTGNDDDRGLCVAFLSELVQMHRRTKCNQILQTIKDEGAFSTMHTLLTYLQMAPIEQQPGIASLLLQLDLLTEPRRMSIYREESIDALFEAFRRKDNYNSQIAAVDASLYLSGRFTSSGKSYTKAWLLKLAGFDQPYNALMKAEGLRKPDYELSEREEEEKAVSVWEKRIALVLCNHEKGYIFEVMKECLKSKSLEMTKSCLVIVSWLCHMVSTLPDTGVQETARRSLLDELVNVLQSSNSLEEKILACLVLKTFISDPAALEELGLHATSINKTLRKLRRSSLVVNDIMKALMNVPSVDATELWSYTEVGALDSSSNGEVLSLVHLNGRVLSSHSDGTIKVWDAGDKVLKLIQEARKHTKAVTCLCVSSSGDALYSGSLDKTIRVWTVKCEKIQCVQVHEVKEPIYDMKANANVACFVSQGTGVKVYNFSGIPKHINFNKYVKSLALSEDKLYCGCSGDCIMEVDLTKHTTSTFYAGVRKLLWKQNIYSLHLHGDLLFAAGSAVDGTAGKTFSLSNKTTVGSFSPGVDIHHMAVSTDLLFTASRLGMIIEVLSKEKYTKIGSVKLGSASGSHTKITYLTTNDDGGLLFIGTSGGKIQVWGLME 1493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 444952 451561 + Carg08673-RA Car09g00089 153826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00089 1493 Coils Coil 75 95 - -
Car09g00089 1493 Pfam WD domain, G-beta repeat 1246 1276 IPR001680 GO:0005515
Car09g00089 1493 MobiDBLite consensus disorder prediction 360 374 - -
Car09g00089 1493 MobiDBLite consensus disorder prediction 360 422 - -
Car09g00089 1493 MobiDBLite consensus disorder prediction 308 328 - -
Car09g00089 1493 MobiDBLite consensus disorder prediction 435 455 - -
Car09g00089 1493 ProSiteProfiles U-box domain profile. 511 586 IPR003613 GO:0004842|GO:0016567
Car09g00089 1493 MobiDBLite consensus disorder prediction 387 422 - -
Car09g00089 1493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1245 1279 - -
Car09g00089 1493 MobiDBLite consensus disorder prediction 435 467 - -
Car09g00089 1493 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1279 IPR001680 GO:0005515
Car09g00089 1493 Pfam U-box domain 513 583 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00089 - - - csv:101221826 2441.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00089 Car-Chr9:444952 Car11g00506 Car-Chr11:2726869 6.64E-18 dispersed
Car18g00505 Car-Chr18:3708513 Car09g00089 Car-Chr9:444952 8.03E-14 dispersed
Car09g00089 Car-Chr9:444952 Car18g00504 Car-Chr18:3705785 1.94E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00089 Car_Chr09 FPKM 51.755749 55.887077 50.279106 52.998264 73.023735 82.705795 73.547295 44.577068 45.45298 42.544319