Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00098 ATGGCGCTCTTAACTTCCCACCACAATAAACGCCGAAAAAGGCACAAAAACCCATCACCGCCGCCGCCGCCCTCCGCCCAATCCTCGTGGGACCAGATCAAGAGCCTCCTCACCTGCAAACAGATCGAGACTTCGAGAGTTCACGAGCCGGTGAAACGCTCGCCGGTGAAACGCTCGCCGGCATACTCGAAGTTGGGGTCTTCTTGCAGCTCCATATGTAGCTTCAGAGACGTGGTTCATGGCAATGCCAAAGTGGTTCATAGAGCCGACAACTCTCCCGAAAGCAGCTCCGTCGGACAGGAAACCAGGTTGCTTCATAGAAAAGCCCCAAACGGTTCCTCATCTCGTTCTTTGACGGCGCCGACACCTGCCAGAACCAAACACGCTGCTTCAGCTTCCTACTCCTCTTCTTCTAGAGGAATCCAATTACGAAAGCTTTCTGGCTGTTATGAATGTCACACCATCGTTGACCCTACTAGGTACCCAATTCCGAGGAGTTCATTATGTCCTTGTCCTCACTGTGGAGAGGTGTTCCCAAAGCCTGAAAGCTTGGAGCTTCACCAATTAGTTCGCCACGCTGTATCCGAGTTGGGTCCTGACGATTCGGGTCGAAACATCGTGGAGATAATTTTCAAGTCAAGCTGGCTGAAAAAGGACCGCCCCATTTGCAAGATCCAACGGATATTAAAGGTCCACAATACCCAACGCACCATCCAACGCTTCGAGGACTGCCGTGATGCAGTGAAGACACGTGCGCTAAACAGCACCAAAAAAAACCCGCGCTGTGCGGCTGACGGCAATGAGCTGTTGAGGTTCCATTGTAGTGCCTTGTTGTGCGACCTCGGCTCACGTGGCTCTACCGGCTTATGCGGCTCGATACCCGGCTGCGGTGTCTGCACCCTCATCCGCCACGGATTCCAGTGCAAGCCCGGTGGGGTCCCTGGCGTACAGACTACTGCCAGTAGCGGTAGGGCCCATGATTCGTTCGGATGCAGCGATGGTCGGCGGCGGGCGATGTTGGTGTGCCGTGTCATCGCCGGGAGAGTCAAGCGTATGGCAGAAGATGGGGCAGGAACAACGACGACGGAGGAGGAAAATATGTCGGCGGCAGGGTCATACGACTCCGTTTCACGACACTCCGGGATGTACTCGAATCTGGAGGAGCTCATCATTTTCAATCCAAAAGCTATCCTTCCTTGTTTCGTCGTCATCTACGAAGCCCTCCAAACCTAA 1233 54.26 MALLTSHHNKRRKRHKNPSPPPPPSAQSSWDQIKSLLTCKQIETSRVHEPVKRSPVKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLHRKAPNGSSSRSLTAPTPARTKHAASASYSSSSRGIQLRKLSGCYECHTIVDPTRYPIPRSSLCPCPHCGEVFPKPESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIQRILKVHNTQRTIQRFEDCRDAVKTRALNSTKKNPRCAADGNELLRFHCSALLCDLGSRGSTGLCGSIPGCGVCTLIRHGFQCKPGGVPGVQTTASSGRAHDSFGCSDGRRRAMLVCRVIAGRVKRMAEDGAGTTTTEEENMSAAGSYDSVSRHSGMYSNLEELIIFNPKAILPCFVVIYEALQT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 476995 478820 - Carg08682-RA Car09g00098 153835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00098 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 197 IPR013087 -
Car09g00098 410 MobiDBLite consensus disorder prediction 89 135 - -
Car09g00098 410 MobiDBLite consensus disorder prediction 43 66 - -
Car09g00098 410 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Car09g00098 410 MobiDBLite consensus disorder prediction 86 135 - -
Car09g00098 410 MobiDBLite consensus disorder prediction 1 31 - -
Car09g00098 410 MobiDBLite consensus disorder prediction 1 18 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01540 Car09g00098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02261 Car-Chr4:18260093 Car09g00098 Car-Chr9:476995 1.29E-108 dispersed
Car09g00098 Car-Chr9:476995 Car15g00647 Car-Chr15:3571696 2.06E-109 dispersed
Car01g01540 Car-Chr1:12929108 Car09g00098 Car-Chr9:476995 3.33E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4032 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00098 - - csv:101222539 664.455