Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00105 ATGAGCTCTGTGGAAGACAAGCTCAAGTCACCAATGGGTTTGGTTAATAACACCCCTCAGACTAACCTTCTCGACGAGATGAAGTTGCTGAAACAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATTAACTCCGAGCTCTGGCACGCGTGTGCTGGTCCGCTTGTTTCCTTGCCCCATGTGGGGAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGCTGATAAAGATTCAGATGAAATCTACGCTCAAATGAGCCTTCAACCGGTGAACTCTGAAAAAGATGTCTTCCTAGTTCCGGACTTTGGACTACGGCCGAGTAAACACCCAAATGAATTCTTCTGCAAAACTTTGACTGCCAGTGATACCAGCACACATGGTGGGTTCTCAGTGCCACGCAGGGCTGCTGAAAAGCTTTTTCCGCCATTGGATTACACAATGCAACCACCAACTCAGGAGCTCGTTGTTCGAGACTTGCATGACAATACCTGGACTTTTCGCCACATCTATCGCGGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTTGTTGGAGCAAAGAGGCTTAGAGCAGGCGATTCTGTTCTTTTCATAAGGGATGAAAAGTCCCAGTTGCTGATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTACTATCCGCAGACAGTATGCATATAGGAGTTCTTGCTGCTGCAGCTCATGCCGCTGCTAATCGCAGTCCATTCACAATCTTTTACAATCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCCTTGGCCAAATATCGGAAATGTGTATTCGGAACTCAGCTTTCTGCGGGTATGAGGTTCGGGATGATGTTTGAAACAGAGGAGTCGGGAAAACGCCGATATATGGGTACAATTGTTGGGATTAGCGATTTAGATCCACTTAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAAGTGGAATGGGATGAGCCAGGGTGCTGCGACAAGCAAAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTCTTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTACACGGCGGATTTTTGGGAGAAACTGATTGGGAAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGAGGGGATCTTTCATATGCTGCGCCAAATCTATGCTCTGAACCACTGATGAAGATGCTACTGAGGCCTCAACTCGTTAGCCTTCACGGAGCCACCTTACACCAGGATTCAGCTAACAATTTAGTGAAGATACAGGACGTGAAGGACATGCAGCCAGAAACCAATTCTAAAATGAAGCAGCCTATTCCGACAGAAATTGCATCTCCCGGGAATCAAAATCCTGATCCCATAAACCCAAATTCATCACCAAAAGAAAGTCTACCAGGAAAAGTGCACACTTCAGCGGCTGCTGAAAGTGAACCTCCAACTGGAGCTGATGATGTTTCAACCAATCAGTCCAATACATTGCCCCCGGTCGGAGATTGTGTGGGGGAAAAACTCAGTGCTAAAGAAGTGAATATGCAGACCCTTGTGAACCAGCTCTCATTTATGAACCAGAATCAGATCCCCATGCAGTCATGGCCGTTGCAGCCTCAGCTTGAATCACTAATCCAACACCCACAACCAATTGACATTCCTCAGCCTGAATTTACGCTGGATGGTGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCCGGGAACCTTTCCATGTTGGCATTGCAAGAATCCTCAACAGTCTTCCCTGAGGCTCTTAATTTTCCCTTACCCTCAGCTGGGCAAGACATGTGGGATCCTCTTAATAATATAAGATTCTCTTCTAACCTGAATTGTATGGGTAATGCAAATGTTATGAGAGCCGTTTCAGACGAGAGCAACAACCAAAGTGGGATATATAGTTGTTCTAACCTTGAAATCAGTAATGGTGGAAATACTTTGGTTGATCCTGCTGTTTCGAGTACTATTCTTGATGACTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCGGATTGCTTGGTTGGAAACTTCAGCTCAAGCCAAGATGTTCAGTCTCAGATTACCTCTGCTGCTAGTCTTGGAGATTCTCAGGCTTTCTCCAGGCAGGACTTCCATGATAATTCAGGTGGTACTTCCTCTTGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCATAACGGCTCCTGGAATCAAGTCGTACCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCAGGATCTGTTGGGAGGTCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCCGCTATCGAATGCATGTTTGGACTTGAAGGGTTGCTTAATGACCCGAGAGGCTCAGGATGGAAACTGGTTTATGTCGATTATGAGAACGACGTCTTGCTTATTGGCGATGATCCATGGGAGGAATTTGTGAGCTGTGTACGGTGCATCAGAATCTTGTCACCTTCAGAAGTTAAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGCCAGAAGGTGGCCGAGGTTAA 2631 46.33 MSSVEDKLKSPMGLVNNTPQTNLLDEMKLLKQMQDQTGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVFGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWESLVKRPMLRVPENIRGDLSYAAPNLCSEPLMKMLLRPQLVSLHGATLHQDSANNLVKIQDVKDMQPETNSKMKQPIPTEIASPGNQNPDPINPNSSPKESLPGKVHTSAAAESEPPTGADDVSTNQSNTLPPVGDCVGEKLSAKEVNMQTLVNQLSFMNQNQIPMQSWPLQPQLESLIQHPQPIDIPQPEFTLDGDGCLINPSCLPLPGVMRSPGNLSMLALQESSTVFPEALNFPLPSAGQDMWDPLNNIRFSSNLNCMGNANVMRAVSDESNNQSGIYSCSNLEISNGGNTLVDPAVSSTILDDYCTLKDADFPHPSDCLVGNFSSSQDVQSQITSAASLGDSQAFSRQDFHDNSGGTSSCNVDFDEGSLLHNGSWNQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVKQMSEEGMKLLNSAMMQGINCSMPEGGRG 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 519797 524652 + Carg08689-RA Car09g00105 153842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00105 876 Pfam Auxin response factor 242 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car09g00105 876 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Car09g00105 876 MobiDBLite consensus disorder prediction 441 509 - -
Car09g00105 876 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Car09g00105 876 ProSiteProfiles PB1 domain profile. 762 846 IPR000270 GO:0005515
Car09g00105 876 MobiDBLite consensus disorder prediction 494 508 - -
Car09g00105 876 MobiDBLite consensus disorder prediction 441 478 - -
Car09g00105 876 Pfam AUX/IAA family 763 849 IPR033389 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01531 Car09g00105 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00105 Car-Chr9:519797 Car18g00462 Car-Chr18:2973511 4.35E-144 dispersed
Car01g01531 Car-Chr1:12880926 Car09g00105 Car-Chr9:519797 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4033 PF02309 AUX_IAA 9.10E-10 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00105 K14486 - csv:101216825 1576.61