Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00110 ATGGCGCGAGGGAAGATCCAGATCAAGCGAATCGAAAACCCTACGAACAGGCAGGTCACCTACTCCAAGCGACGCAACGGCCTCTTCAAAAAGGCCAACGAGCTCACCGTCCTCTGCGATGCCAAAGTCTCCATCATCATGTTTTCCAGCACTGGAAAACTCCACGAGTATATCAGCCCTTCCACCTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTCTAGGCGTTGATCTATGGATCTCTCACTACCAGAGAATGCAAGAGAATCTGAAGAAGCTCAAAGACGTGAATCGCAGCCTTCGCAGGCAGATTATGCAAAGGATGGGGGAATGCATGAATGATCTGAGTTTTGAGGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCCGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTGAAGAGCGTAGGAGAAATACACAAGAGTCTTCTTCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTGGACAATGGAGGTGTCGGAGTCGGAGTAGGAGTAGGCGTAGGAGTAGGCGGAGGAGATTATGACTCAGTTATGGGGTACCACCCAGGCGGTGCCCATCCTCGCATATTCGCCTTGCGCCTCCAGCCCAACCACCCCAATATTCACCTTCAACACCCTCCCCCTCCAGATCTCACTACCTATCCACTCCTTGAGTAG 738 50.41 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKELFDQYQKTLGVDLWISHYQRMQENLKKLKDVNRSLRRQIMQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGVGVGVGVGGGDYDSVMGYHPGGAHPRIFALRLQPNHPNIHLQHPPPPDLTTYPLLE 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 542594 544176 - Carg08694-RA Car09g00110 153847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00110 245 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00110 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Car09g00110 245 Coils Coil 84 104 - -
Car09g00110 245 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Car09g00110 245 MobiDBLite consensus disorder prediction 228 245 - -
Car09g00110 245 MobiDBLite consensus disorder prediction 225 245 - -
Car09g00110 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Car09g00110 245 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Car09g00110 245 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car09g00110 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 PANTHER APETALA3 1 230 - -
Car09g00110 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car09g00110 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01517 Car09g00110 CCT
Car01g01517 Car09g00110 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01135 Car-Chr4:6549010 Car09g00110 Car-Chr9:542594 1.36E-40 dispersed
Car09g00110 Car-Chr9:542594 Car09g00678 Car-Chr9:3977159 3.52E-42 dispersed
Car01g01517 Car-Chr1:12820497 Car09g00110 Car-Chr9:542594 5.75E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4034 PF01486 K-box 1.20E-20 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00110 K09264 - csv:101218008 397.127