Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00113 ATGTTGTCAATTGTTTCTCCTCCGTCGTCTTCCTCGTTTGTTCTTCATGACAGGAGCTTCTCCTTTAGCGTCTTCCCGAAGAGGCGTTACCGAAACAGAAGTTTCTCTGGGTATTTGAGCTACAGCTCAATTAAGTGCAAATTAGCTAGGGTGGTGGACTCTTCCGCTAACCCAGCTACGTTAACGAAAGAACCTCATAAGTATTTTGATCAGGCTATCATAACAGTTCGTTCAGGAGATGGAGGACACGGTACAGTTCTTAGTATGCCTAACCAACAAACAAGCAAGTCCCAAGGAAAACATGGGAAGGAGAAGGAGAAGGCGAAGAAGAAAAGTTTGTATAAAAGGGACTTTGATGGGTCTCTAATTCTTCCCATGGGTGGCCGTGGTGGAGATGTGGTAATTTATGCCGATGAGGGGAAAGACTCACTGCTGGAATTCCACACCAAGAGCCGGTATAATGCAAAACGTGGTGGCAATGTTGATGCAATGGGCGTTTTGACCTCCCAATTGCACAATGGATTTGCTGCCCCAACTCTGCGCATTCCTGTTCCTATAGGTACTGTTATAAAACGTAAAAGAGGAAAATTGTTGGCTGATCTGGTCCATCCAGGTGATGAGATTCTTGTTGCTAGAGGAGGACAAGGAGGGATAAGCCTGATAGATACGCCAGAGAGTAGAAGGAGAAAGCTGATGTCTCTGACCTCCAATGTGATGAGAGATGAAAGTGATAAGGTGAAGGTTCTGGTATTTGGTCAACCTGGGGAAGAGGTCAGCTTGGAGTTGATTCTTCGGGTAGTTGCCGATGTCGGTCTGGTTGGACTTCCCAATGCTGGAAAATCAACGCTTCTGGCAGCCATTACTCTTGCAAAACCCGACATTGCAGACTATCCTTTCACTACTTTAATTCCAAACCTTGGACGCCTTGGTGGGGATCCCAGTTTAGGAGCAGGAATGTATCAATCTGAAGCCACTTTAGCAGATTTACCAGGTCTTATAGAAGGTGCTCATTTGGGTAAGGGTCTTGGACGTAACTTCCTGAGGCATCTGAGAAGGACCCGGCTGTTGGTTCATGTTGTCGATGCAGCTGCAGAGAGCCCTGTCAATGACTATAGGACTGTGAGAGAAGAGTTGCGGATGTACAATCCTAATTACCTTGAAAGACCGTATGTTGTGGTGCTAAATAAGATCGACCTTCCTGAGGCCAGGGATAGGCTTCCATCCATAACTGAGGAAATATTGAGAATTGGAAGGGATGATCTTTATCCTGAGCAAGTGGGTTCTGAAAACAGTGTAGAATCATCACTTCCAGAAGGCGATCTTGCAACTCCTTCGGAAATTCCAGTTGCAGATCATCAGGATAGAGAGATTGAAGACTATCCCCGTCCTCTTTCTGTCGTAGGCGTCAGTGTTCTGAAAGGTATCAATATAAGTTTAATGTTGAAAGAGATTCGAGCAGCGTTGAGGAAGTGCAGAGATTCCGATGGAGTATCGATGAATTCGGGTGGTTAA 1512 45.63 MLSIVSPPSSSSFVLHDRSFSFSVFPKRRYRNRSFSGYLSYSSIKCKLARVVDSSANPATLTKEPHKYFDQAIITVRSGDGGHGTVLSMPNQQTSKSQGKHGKEKEKAKKKSLYKRDFDGSLILPMGGRGGDVVIYADEGKDSLLEFHTKSRYNAKRGGNVDAMGVLTSQLHNGFAAPTLRIPVPIGTVIKRKRGKLLADLVHPGDEILVARGGQGGISLIDTPESRRRKLMSLTSNVMRDESDKVKVLVFGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITLAKPDIADYPFTTLIPNLGRLGGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDAAAESPVNDYRTVREELRMYNPNYLERPYVVVLNKIDLPEARDRLPSITEEILRIGRDDLYPEQVGSENSVESSLPEGDLATPSEIPVADHQDREIEDYPRPLSVVGVSVLKGINISLMLKEIRAALRKCRDSDGVSMNSGG 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 554491 558032 - Carg08697-RA Car09g00113 153850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00113 503 Pfam 50S ribosome-binding GTPase 269 396 IPR006073 GO:0005525
Car09g00113 503 ProSiteProfiles Obg domain profile. 66 267 IPR006169 -
Car09g00113 503 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 268 489 IPR031167 GO:0005525
Car09g00113 503 ProSitePatterns GTP1/OBG family signature. 328 341 IPR006074 GO:0005525
Car09g00113 503 MobiDBLite consensus disorder prediction 426 445 - -
Car09g00113 503 Pfam GTP1/OBG 127 264 IPR006169 -
Car09g00113 503 MobiDBLite consensus disorder prediction 83 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00113 - - - cmax:111473505 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01274 Car-Chr6:9136025 Car09g00113 Car-Chr9:554491 2.55E-56 dispersed
Car09g00113 Car-Chr9:554491 Car20g00955 Car-Chr20:11053806 1.29E-12 dispersed
Car09g00113 Car-Chr9:554491 Car13g00377 Car-Chr13:6331056 8.50E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00113 Car_Chr09 FPKM 12.387515 16.637964 9.278779 9.225778 29.314026 28.870867 31.887213 7.601072 6.039045 6.351969