Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00118 ATGACGAGCGCCTCCCTCGTCAGTTTTTTTCCCCGCCCTTCAATCCCAGAACAATGCTCTTCATGTACTTCTTCGAACCAGAATCGCGCACTTTTCCCCTTTGCCTCAAGAAAGGATTCGAGGAATTCTATCAGAACCCTTTGTAGTACTTTTCAACAAGAGCCTCTCGTCGTGTCCTCCGATAATCTCCCTTTCCATGGTTCTTTTGTCAAGCCTATTCAGGAAGTAGAAGGAACCAAAGATGCTGATGAGCTCATCCATGGCGTCTCCACCACTGAACCAGAGCCTAAATCGCAGTTATCGAGTAGGGTTAAAAAGAAGGCACAAGAAGACGGGGATAGCCTCGAGAGTAGGTTTAAGCTGCGAAATGGAAGGGAGATTTTTGAAGAACAAGCCTACCTCGTTGGCTTAGAGCGGAAAGGAGATGTTGGCCAACTTTTTAGCATAGACGAATCTCTGAAAGAACTGGCACAGTTAGCTGACACTGCTGGACTAAAGGTCGTTGGTTCAACATATCAAAAACTAGCTTCTCCAAACCCAAGGACTTACATCGGATCTGGCAAAGTTGCAGAAATCAAGAGTGCAATTCATGCATTAGGTATAGAGACTGTGATATTTGATGATGAGCTTTCAGCTGGGCAACTGAGAAACTTGGAAAAATCATTTGGTGGAGATGTTAGAGTTTGTGATCGTACTGCCCTAATCCTGGATATCTTCAATCAGAGAGCAGCAACACATGAGGCATCTCTACAGGTGGCATTGGCACAAATGGAATACCAGTTACCACGACTTACAAAGATGTGGACCCACCTTGAGCGTCAAGCAGGAGGGCAGGTGAAAGGTATGGGTGAGAAGCAAATTGAAGTGGATAAGCGTATCTTACGAACGCAAATTGGTGTTCTCCGGAAGGAATTAGAGTCTGTTAGGATGCATCGAAAACAGTACAGAAGCCGGCGCTTTTCTGTACCTGTCCCGGTAGTTTCTTTGGTTGGATATACAAATGCTGGAAAGAGTACGCTCTTGAATCAGTTGACTGGAGCTGAAGTCCTTGCAGAGGATCGATTGTTTGCAACCCTTGATCCAACTACAAGAAGGGTTCAGATGAAGAATGGGAACGAGTTTCTACTCACTGATACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACACTAGAGGAGATATCAGAATCATCATTGCTGGTTCACGTGGTGGACATCAGCCATCCGCTGGCTGAGCAACAGATAGAAGCTGTGGATAAAGTTCTTTCAGAATTGGATGTGTCATCAATTCCGAAGTTGATGGTTTGGAACAAGGTTGACAAGGTTAGTGATCCTCAACATATTAGACTGGAAGCAGAGAAGAGAGGAGACGTTGTTTGTGTATCTGCCCTGAGTGGTGATGGCTTGGACGAATTTTGTAATGCAGTTCAGGGAAAATTGAAGGACTCGATGGTTTGGGTAGAAGCCTTGATCCCATTTGATCGAGGTGAGCTCCTGAGCACTGTGCATCAGGTTGGAGTGGTAGAGAAAACTGAATACACGGAGAACGGAACACTGGTCCAGGCATACGTTCCCCTCAGGTTCTCAAGGCTGCTTACACCAATGAGACAGCTATGTATATCCTGA 1647 45.48 MTSASLVSFFPRPSIPEQCSSCTSSNQNRALFPFASRKDSRNSIRTLCSTFQQEPLVVSSDNLPFHGSFVKPIQEVEGTKDADELIHGVSTTEPEPKSQLSSRVKKKAQEDGDSLESRFKLRNGREIFEEQAYLVGLERKGDVGQLFSIDESLKELAQLADTAGLKVVGSTYQKLASPNPRTYIGSGKVAEIKSAIHALGIETVIFDDELSAGQLRNLEKSFGGDVRVCDRTALILDIFNQRAATHEASLQVALAQMEYQLPRLTKMWTHLERQAGGQVKGMGEKQIEVDKRILRTQIGVLRKELESVRMHRKQYRSRRFSVPVPVVSLVGYTNAGKSTLLNQLTGAEVLAEDRLFATLDPTTRRVQMKNGNEFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIEAVDKVLSELDVSSIPKLMVWNKVDKVSDPQHIRLEAEKRGDVVCVSALSGDGLDEFCNAVQGKLKDSMVWVEALIPFDRGELLSTVHQVGVVEKTEYTENGTLVQAYVPLRFSRLLTPMRQLCIS 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 571189 579272 + Carg08702-RA Car09g00118 153855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00118 548 MobiDBLite consensus disorder prediction 88 114 - -
Car09g00118 548 Pfam 50S ribosome-binding GTPase 327 445 IPR006073 GO:0005525
Car09g00118 548 Pfam HflX C-terminal domain 457 526 IPR045498 -
Car09g00118 548 Pfam GTP-binding GTPase Middle Region 242 319 IPR032305 -
Car09g00118 548 MobiDBLite consensus disorder prediction 99 114 - -
Car09g00118 548 Hamap GTPase HflX [hflX]. 153 516 IPR016496 GO:0005525
Car09g00118 548 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 325 491 IPR030394 GO:0005525
Car09g00118 548 Pfam GTP-binding GTPase N-terminal 151 239 IPR025121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00118 K03665 hflX; GTPase - csv:101219907 980.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00118 Car-Chr9:571189 Car18g01265 Car-Chr18:11947236 1.78E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1004 . . . Bda03g00271 . Bpe04g00226 Bma04g00221 . . . . Cma09g00132 . . . Cpe06g00092 . . . . . . . . . . . . . . . . . Cone17ag1363 Cone20ag0118 Lsi04g01703 Csa03g04243 Chy04g00472 . . . . . . . . . . Cmo01g01996 Cmo09g00129 . . . Car09g00118 . . . . . . . . . Cla05g01909 Cam05g2046 Cec05g2055 Cco05g2110 Clacu05g2039 Cmu05g1918 Cre05g2040 . . . Cme04g00518
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011128 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00118 Car_Chr09 FPKM 6.252282 6.836725 1.26659 1.625149 4.794017 5.21561 5.33799 0.530512 0.378944 0.312361