Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00133 ATGCCTCTGAGAGGCATAGTTCGTGAGCAGAGTGAAATACGAGAAGGCAGTGAGAATTCTTCGAGAAAAGTGAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTCCCGGAGCAGCCTTCTTCTTCATCTTTTCCGGTTCCGATCGACCAGAGCCGCTGGGCGAGTTTACCTCCGGAGCTTCTTTTAGACATAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCCCGCCGGGATGTTGTTGCCTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTAAGGACTCCCGAACAGTGTGGGTGGATCACTTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGACACTCCGATCCAGTGCTTCATCAAGAGAGAAAGGGCAACGTCAACGTTTCGACTTTATCTCGGGCTAAGCCCTGCCCTGTCGGGTAATCTAAGTAAACTTTTGCTTACTGCAAAAAGATTTCGACGAGCCATGAGTACAGAGTTCATTATATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACATTGGAAAGTTAAGGTCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAGCCTCCACATGATCCAAAACTGCGAACCAGTAGATCAAAGCGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCGACGAACTATACAGTCGCTGCCGTAGCTTACGAGCTGAACGTCCTCCGCACGAGAGGCCCGAGAAGAATGAGGTGCACCATGCATTCAATACCTGTTGCAGCCGTGGAGGAGGGTGGCACTGCCCCAACTCCCACGGAGTTTAAAGACTGTATCAATGAGCATCATTCATCGACATCGATTTGCGAAGGTAAGAAGCCGATAATCGAGTCTCCGAAGCCTCAAGAATCAATGGTTCCATTGGTATTGAAGAACAAAGCTCCGAGATGGCACGAACAGCTTCAGTGCTGGTGCCTCAATTTCAAAGGGCGCGTCACGGTAGCCTCAGTGAAAAACTTTCAGCTGGTTGCTGCTGTGGAGACAAGTGAAAATTTGTCTGCAGCTGAACAAGAGCGAGTGATTTTGCAGTTTGGTAAGATTGGAAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGCCTTAGTAGCTTTGACACCAAGCCGGCCTGTGAATGA 1224 47.71 MPLRGIVREQSEIREGSENSSRKVREGVQMRHLGKSHIVPEQPSSSSFPVPIDQSRWASLPPELLLDIIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRFRRAMSTEFIISLVPDDFSRASNNYIGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYTVAAVAYELNVLRTRGPRRMRCTMHSIPVAAVEEGGTAPTPTEFKDCINEHHSSTSICEGKKPIIESPKPQESMVPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVETSENLSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 637201 639170 + Carg08717-RA Car09g00133 153870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00133 407 Pfam Tub family 118 402 IPR000007 -
Car09g00133 407 ProSitePatterns Tub family signature 1. 335 348 IPR018066 -
Car09g00133 407 MobiDBLite consensus disorder prediction 1 27 - -
Car09g00133 407 Pfam F-box domain 57 104 IPR001810 GO:0005515
Car09g00133 407 MobiDBLite consensus disorder prediction 8 27 - -
Car09g00133 407 ProSitePatterns Tub family signature 2. 392 407 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01497 Car09g00133 CCT
Car01g01497 Car09g00133 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00698 Car-Chr4:4053007 Car09g00133 Car-Chr9:637201 0 dispersed
Car09g00133 Car-Chr9:637201 Car16g00653 Car-Chr16:4150748 0 dispersed
Car01g01497 Car-Chr1:12703505 Car09g00133 Car-Chr9:637201 0 wgd
Car07g00424 Car-Chr7:2158858 Car09g00133 Car-Chr9:637201 2.45E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4036 PF01167 Tub 4.60E-106 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00133 K19600 - csv:101222500 756.133