Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00148 ATGGTTGATATGGAAAATTGTTCGCCGGTTGCGGTTTCTGGAGGAGATGCTTCTTTATCTTCTTCACGTTATATCGAGCCAGTGACGGCGGTAGCCCTGCCGAAGAAGAAACGGAACCTTCCCGGAATGCCAGACCCGACGGCGGAGGTGATTGCTTTGTCGGCGGAGAGTTTGCTGGCGACGAACCGGTTTGTGTGCGAGATATGCAACAAAGGCTTCCAGCGGGACCAGAACCTGCAGCTTCACCGGCGAGGCCACAACCTTCCCTGGAAGCTTCGGCAACGGACTGACAATGAGGTGCGTAAGCGCGTCTATGTCTGTCCGGAACCTACCTGCGTCCACCACAATTCGGCGAGAGCACTCGGCGATCTTACCGGAATAAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAATGGAAGTGCGAGAGATGCTCGAAGAAATACGCGGTAAAATCCGATTGGAAAGCGCATATGAAAACTTGTGGAACGCGAGAGTACAAATGCGATTGTGGCACTTTATTTTCTAGGAGGGATAGTTTTATTACGCATCGAGCCTTTTGCGATGTATTAGCGGAGGAAAGTGCTCGTGCTCAAACCCTAGCACTTCCATACTCTAACCCGAAGGAATCGGACACGGTTTCGCCTCCCCCGCCACCGCTCACTCCGACAACCACTGTGGTATCTCCGGCGTTGTCAATTCACAGCTCAGAGCTAGCTGATACTCAGATAAGAGTTTCATCCATATTAACGCCTTCAGGCGCGGCTGTCAATAGTAGCTCAAACGATTTGTTTGGAAATAGTACTGTTTTTGCTACCTCTGCATCGTCCCCGACCGTTGCAGGCTCCAATTTACCCACCTCGATTGTGTCATACGATTGCCCCTCTACTCGCCCTTCTGTTTCCACCGTGAATCCCACCTCGCTCTCTCTCTCCACACCTCTCTATCTTTCCACCAAAGGATCATCCTCCCTCTTTCCCCGACCTGACCAAGACCGTCTGCAGTACACGTGTTCAACTCAACCGGCGGCCATGTCCGCCACCGCTTTGCTACAGAAGGCAGCGGAAATGGGGGCAACCGCGTCTAATCCGTCATTGTTCCGTGGCATTGGGATGGCTACTACTACTTCTTCAGTTCATGATAGGTCTGCCACTGCTAATGTGAACCGAGATCATTGCAATGGCGCTTCGTTAACGGGTGGGTTATGGCTTGAACTTCCCTCTGGACTGGCTGGTTCTGGTTTGATGATGGCGGGTGGTCCATTTTGCTCGTTTGGAAGTCAGCCCATGACGAGGGATCTTCTTGGGCTTGGCATAGACGGCGGCGGGGCCTCTACTAGTAGATTTTCAGCTTTGATCGCTTCCATGAACGGTGGGTGTGCCTACGACGAAAGCTCCACCGCCGACGCTTGGGATCGAGATGAACAAGATGGAAAATATTGA 1443 52.18 MVDMENCSPVAVSGGDASLSSSRYIEPVTAVALPKKKRNLPGMPDPTAEVIALSAESLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTDNEVRKRVYVCPEPTCVHHNSARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVKSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDVLAEESARAQTLALPYSNPKESDTVSPPPPPLTPTTTVVSPALSIHSSELADTQIRVSSILTPSGAAVNSSSNDLFGNSTVFATSASSPTVAGSNLPTSIVSYDCPSTRPSVSTVNPTSLSLSTPLYLSTKGSSSLFPRPDQDRLQYTCSTQPAAMSATALLQKAAEMGATASNPSLFRGIGMATTTSSVHDRSATANVNRDHCNGASLTGGLWLELPSGLAGSGLMMAGGPFCSFGSQPMTRDLLGLGIDGGGASTSRFSALIASMNGGCAYDESSTADAWDRDEQDGKY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 719274 721480 + Carg08732-RA Car09g00148 153885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00148 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Car09g00148 480 Pfam Zinc-finger of C2H2 type 64 86 - -
Car09g00148 480 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01477 Car09g00148 CCT
Car01g01477 Car09g00148 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00486 Car-Chr7:2426305 Car09g00148 Car-Chr9:719274 6.58E-29 dispersed
Car09g00148 Car-Chr9:719274 Car17g00674 Car-Chr17:6243622 5.54E-90 dispersed
Car01g01344 Car-Chr1:11942700 Car09g00148 Car-Chr9:719274 6.96E-06 transposed
Car16g00684 Car-Chr16:4345668 Car09g00148 Car-Chr9:719274 2.50E-119 transposed
Car01g01477 Car-Chr1:12613645 Car09g00148 Car-Chr9:719274 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4037 PF12874 zf-met 0.0034 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00148 K25869 - jre:108995564 520.776