Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00150 ATGCCATCTTATATGTCAAAACTACGAGCATCCGTTCAAATTCTAGGGTGGGAAGGCGGATTTAAAGGTTCATTGGAGCTTCTTTTTGGGCATCAGAAACTGTTGTGTGGCAATTCTAGTCTATTTCACTCGGTTCCTTATTCCTCACTTACAGAGTTGCATGCTCTCTTAAGACCTGGCACTATTTCGGGTGCTAGTTCAGAGCTAGTCAATCGCAGGAAGAATATCTCAGCTCTTGGAGCAATTTCTCGCACATTTTCTGTTCCTTCTGTTTCAGGCCCTGCATTTCAGACTTGTAGGTATCACATTGATTGTGCCGTTGCTGAATCCAATCAATTTTCATCTCACAGCAAGTGTCGAGACAAACCAATGGCTGCTTGTGGTTCTAAAGCTACACTTGGTGAATGTTCTTTTGGTAATTCAAGTTTTAGAAATGCACCCTCGTCTTCTTCAGCGATCAGTGCTAGTATTTGTTTTAACAATAGAAGTGTTAATAGATGTCGGAAAGCCAGCATGAGTTTGAAAAATCAAGAGCAGCCTAGCAACAATGTGATATATGGATACTTCACTTATGACGTTGCAAAGAGGTTTTGCAGTAGTTACCTACATACTATGTCGGGAGTCGGTGATCTTCATACTTCATCAACTTCTCAGTTTTCAGCTGGTTCTGCCCCCAATGTGTCATTTGATAATTCTGCACGGGAGGAACAACCTGTCAACTCTACTGATTCATCTGAACAGAATATCTCGATGGGCAAATCATTGAAACTGGTTTCTGGATCATGCTATCTACCCCATCCTGATAAAGAAGATACTGGAGGAGAGGATGCTCACTTTATCTGTGTAGATGAACAGGCCATAGGGGTGGCTGATGGTGTGGGTGGCTGGGCAGATCTTGGTGTTGATGCTGGACAGTATTCCCGAGAACTTATGTCTAATTCAGTTAGTGCAGTTCAGGAAGAACCCAAGGGCTCAATAGATCCAGCTAGAGTCTTGGAGAAGGCTCACTCAAAAACAAAAGCCAAAGGTTCCTCCACTGCTTGTATCATAGCGCTAACAGAACAAGGTCTCCATGCAATCAACTTAGGAGACAGTGGATTTATGGTGGTTAGAGACGGATGCACTGTCTTTAGATCTCCCGTGCAGCAGCATGATTTTAATTTCACCTTTCAATTGGAGAGTGGAAACAATGGAGATCTGCCTAGCTCTGGTCAGGTTTTCACAGTCCCTGTTGCTCCTGGAGATGTCATAATTGCTGGCACCGATGGACTCTTTGATAACTTGTACAACAACGAGATCACTGCAGTGGTGGTTCATGCCATGAAAGCAGGCTTAGGCACTCAGGTGACTGCCCAGAAGATAGCTGCTCTTGCACGCCAACGAGCTCTAGATAAAGACAGACAAACGCCTTTCTCCACTGCTGCTCAAGATGCTGGATTTCGCTATTATGGAGGCAAGCTTGACGACATCACAGTCGTCGTGTCATATGTTACGCGCTCTAATGATAAGTGA 1512 44.18 MPSYMSKLRASVQILGWEGGFKGSLELLFGHQKLLCGNSSLFHSVPYSSLTELHALLRPGTISGASSELVNRRKNISALGAISRTFSVPSVSGPAFQTCRYHIDCAVAESNQFSSHSKCRDKPMAACGSKATLGECSFGNSSFRNAPSSSSAISASICFNNRSVNRCRKASMSLKNQEQPSNNVIYGYFTYDVAKRFCSSYLHTMSGVGDLHTSSTSQFSAGSAPNVSFDNSAREEQPVNSTDSSEQNISMGKSLKLVSGSCYLPHPDKEDTGGEDAHFICVDEQAIGVADGVGGWADLGVDAGQYSRELMSNSVSAVQEEPKGSIDPARVLEKAHSKTKAKGSSTACIIALTEQGLHAINLGDSGFMVVRDGCTVFRSPVQQHDFNFTFQLESGNNGDLPSSGQVFTVPVAPGDVIIAGTDGLFDNLYNNEITAVVVHAMKAGLGTQVTAQKIAALARQRALDKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYVTRSNDK 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 725177 729136 + Carg08734-RA Car09g00150 153887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00150 503 Pfam Stage II sporulation protein E (SpoIIE) 285 497 IPR001932 -
Car09g00150 503 Gene3D - 269 389 IPR036457 -
Car09g00150 503 SUPERFAMILY PP2C-like 261 494 IPR036457 -
Car09g00150 503 SMART PP2C_SIG_2 271 497 IPR001932 -
Car09g00150 503 ProSiteProfiles PPM-type phosphatase domain profile. 261 497 IPR001932 -
Car09g00150 503 PANTHER PROTEIN PHOSPHATASE 87 502 - -
Car09g00150 503 Gene3D - 400 502 IPR036457 -
Car09g00150 503 MobiDBLite consensus disorder prediction 222 249 - -
Car09g00150 503 SMART PP2C_4 248 495 IPR001932 -
Car09g00150 503 PANTHER PROTEIN PHOSPHATASE 2C 87 502 IPR039123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00150 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101205693 881.708
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01476 Car09g00150 CCT
Car01g01476 Car09g00150 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01071 Car-Chr1:10033632 Car09g00150 Car-Chr9:725177 6.82E-64 dispersed
Car01g01079 Car-Chr1:10078591 Car09g00150 Car-Chr9:725177 6.50E-65 dispersed
Car09g00150 Car-Chr9:725177 Car16g00683 Car-Chr16:4340565 6.75E-148 dispersed
Car01g01476 Car-Chr1:12605502 Car09g00150 Car-Chr9:725177 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g910 Blo01g01554 . . Bda03g00254 . . Bma04g00203 Bma01g02309 . . Cma01g01892 Cma09g00171 Car01g01476 . . . . . . . . . . . . . . . . . . . . Cone17ag1330 Cone20ag0148 Lsi04g01644 Csa03g04189 Chy04g00530 . . . . . . . . . . Cmo01g01955 . . . . Car09g00150 . Cpe02g00140 . . . . . . . . . . . . . . . . . Cme04g00610
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g00150 Car_Chr09 FPKM 0.0 0.0 0.0 0.0 4.948956 0.0 0.0 0.0 0.0 0.0