Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00212 ATGCTCCTTCTTAACAACAACATGGCCGTGGAGCTCATGGTGGGGTTTGGGGATGCTACCACCGCTACTAATTTCACGCCCAAGTTGGAAGAAAATGCCGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGGATTCAGAGCGTCCAGAATTTCCTCCGATTGATGTCCCATACCCCTAATCAACACCACTCCCAACACGATTCTTCCACCTCCACGACTCCCAATGCTATCGCTCCATACGATGCCGTCGCCGATTCCGTCGTCAGCAATTTCAAGAAGGTCATTTCTTTGCTCGATCGGAATAGAACCGGTCACGCTCGCTTCAGAAGGGCGCCGGTTCTTCATACTCCCCCGCCGCCTCCTCCACCGAAGGCCAAGCCGTTGCAGCACCAAGATCCGAGTTCGTCATCAGCCCCTCAGGTTCAAGTAAAGAAACAGGAACCAGTCTCTGCTTTTAAGGTTTATTGCCCCACGCCCTCTGTTGTGCGTTTGCCTCCTCTGCCTCACAACAACCCCCATCAGCCTTCTCATCCACCGAATACGTTCCAAGCACAGCAAAATACTTCGTCGGTGGTACTAAAAAATGGGTCTGTAGATAGAAAAGATCCGACTACCACCATCAACTTCGTAGCCTCGCCCCCGATTTCCGCTGCAAATTCCTATATTTCTTCTCTAACCGGAGACACCGAAAGCTTACAGCCATCTATGTCATCTGGGTTCCAGTTCACCCACATGTCCCAGGTCTCTTCCGCCGGAAAGCCCCCACTTTCAACCTCCTCGCTAAAGAGAAAATGCAATTCTATGGACGATTCCGCCATGAAGTGTGCCTCATCCTCCGGTCGGTGTCACTGTTCCAAGAAGAGCAGGAAAAACAGGATAAAAAGAGTCATCAGAGTTCCGGCGGTGAGCTCCAAACTTGCGGATATCCCACCGGACGATTACTCCTGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCCCATCCAAGGGGATATTACAAATGTAGCAGTCTGAGAGGCTGTCCAGCACGGAAACACGTAGAACGTGCCTTAGACGATCCAACAATGCTGATTGTAACTTACGAAAACGATCACAATCACGCCCACTCCACCGAAACACCTGCAACGCTTGTTCTGGAATCGTCATAA 1155 50.82 MLLLNNNMAVELMVGFGDATTATNFTPKLEENAAVSAVQEAASAGIQSVQNFLRLMSHTPNQHHSQHDSSTSTTPNAIAPYDAVADSVVSNFKKVISLLDRNRTGHARFRRAPVLHTPPPPPPPKAKPLQHQDPSSSSAPQVQVKKQEPVSAFKVYCPTPSVVRLPPLPHNNPHQPSHPPNTFQAQQNTSSVVLKNGSVDRKDPTTTINFVASPPISAANSYISSLTGDTESLQPSMSSGFQFTHMSQVSSAGKPPLSTSSLKRKCNSMDDSAMKCASSSGRCHCSKKSRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAHSTETPATLVLESS 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1055588 1057674 - Carg26306-RA Car09g00212 153949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00212 384 ProSiteProfiles WRKY domain profile. 306 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car09g00212 384 MobiDBLite consensus disorder prediction 130 145 - -
Car09g00212 384 MobiDBLite consensus disorder prediction 114 129 - -
Car09g00212 384 MobiDBLite consensus disorder prediction 107 147 - -
Car09g00212 384 MobiDBLite consensus disorder prediction 164 184 - -
Car09g00212 384 Pfam Plant zinc cluster domain 263 309 IPR018872 -
Car09g00212 384 Pfam WRKY DNA -binding domain 313 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01421 Car09g00212 CCT
Car01g01421 Car09g00212 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01194 Car-Chr1:11055619 Car09g00212 Car-Chr9:1055588 8.28E-77 dispersed
Car02g00338 Car-Chr2:2396518 Car09g00212 Car-Chr9:1055588 2.38E-82 dispersed
Car09g00212 Car-Chr9:1055588 Car20g00828 Car-Chr20:5497044 1.91E-87 dispersed
Car01g01421 Car-Chr1:12282329 Car09g00212 Car-Chr9:1055588 0 wgd
Car03g00867 Car-Chr3:6952711 Car09g00212 Car-Chr9:1055588 7.85E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4044 PF03106 WRKY 3.90E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00212 - - cmo:103493562 653.284