Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g00219 | ATGAGAAACTACAGAATGGCGAAACGGCATTGCTACCCACTTTCAATTGCGCATTCAATTTCAGGTCACCAAAACGGTTCACTTTTTCTTGATTCCCTCTACTGCTTGGAGGAGGAGGAAGAAATTGGGGATGGACATTCCCAGCCGAAGATCGAAGCTTTCTCGATAAATGTTAACGTCGATTCCCCGAATTCTGTGTTCTTGTCGGACAGGGACTTTCTCTGGGAAGACGAGGAATTGGTGTCTCTGTTCTCAAAGGAGAACAGAAATAAGCTCCACGACGCTCTCCCACACAACCCCTCTCTAGCAGCGGCTCGCTCCGACGCGGTTGAGTGGATTCTCAAGGTCAATGCCCATTACTCCTTTACTGCCCTCACCGCCGTTTTGGCCGTTGATTATGTCGACAGGTTCCTGTCCAGCCCCCATTTTCAGATTGACAAGCCATGGATGACCCATCTCACCGCCATTGCCTGTTTATCTCTCGCTGCTAAAGTGGAGGAAACCGAAGTTCCCCTTCTTTTAGATCTCCAGGTGGAGGAAAATGGGTACTTTTTCGAAGCTAAAACCATTAAAAGAATGGAGATTCTTGTTCTCTCTACGCTTCTTTGGAGAATGAATCCGGTGAACCCACTTTCATTTTTGGACTATATTGTAAGACGGCTCGGCTTCAAGGACCAGCTCTGTTCTGAATTCCTCTGTAAATGTGAAAGATTACTTCTTTCTGTCATTTTAGATTCCAGATTCGTATGCTTTCTTCCATCAGTGATAGCAAGCGCCATTATTTTTCAAGTTATCAACGACAAAGAACCCCATGTCGCAGCAAAATTCCACGATCAGCTTCTGGGTTTTCTTCAAATCGACAAGAATAAGGTGGAAGATTGCTCACAATTCATCATAGAGGCTTCACCGAGAGGACACACAAACAAACAAAGATTTGGTTTAGTGGACATGTCGTGCAGCTCAAATGGTCGGACTCAGAATGTGGACCGTGTAGTGTCGTCGCCGGAGACAGCAACGAAGAAGAGAAAAATTGATGAACAGCCACCGTAG | 1050 | 45.81 | MRNYRMAKRHCYPLSIAHSISGHQNGSLFLDSLYCLEEEEEIGDGHSQPKIEAFSINVNVDSPNSVFLSDRDFLWEDEELVSLFSKENRNKLHDALPHNPSLAAARSDAVEWILKVNAHYSFTALTAVLAVDYVDRFLSSPHFQIDKPWMTHLTAIACLSLAAKVEETEVPLLLDLQVEENGYFFEAKTIKRMEILVLSTLLWRMNPVNPLSFLDYIVRRLGFKDQLCSEFLCKCERLLLSVILDSRFVCFLPSVIASAIIFQVINDKEPHVAAKFHDQLLGFLQIDKNKVEDCSQFIIEASPRGHTNKQRFGLVDMSCSSNGRTQNVDRVVSSPETATKKRKIDEQPP | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1082662 | 1083995 | + | Carg26299-RA | Car09g00219 | 153956 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g00219 | 349 | MobiDBLite | consensus disorder prediction | 335 | 349 | - | - | |
| Car09g00219 | 349 | ProSitePatterns | Cyclins signature. | 106 | 137 | IPR006671 | - | |
| Car09g00219 | 349 | Pfam | Cyclin, C-terminal domain | 208 | 308 | IPR004367 | - | |
| Car09g00219 | 349 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - | |
| Car09g00219 | 349 | Pfam | Cyclin, N-terminal domain | 97 | 206 | IPR006671 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01415 | Car09g00219 | CCT | |
| Car09g00219 | Car12g00528 | CCT | |
| Car09g00219 | Car12g00528 | ECH | |
| Car01g01415 | Car09g00219 | ECH | |
| Car05g00140 | Car09g00219 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car09g00219 | Car-Chr9:1082662 | Car12g00565 | Car-Chr12:3777855 | 2.82E-72 | dispersed | |
| Car01g01415 | Car-Chr1:12255474 | Car09g00219 | Car-Chr9:1082662 | 0 | wgd | |
| Car11g01112 | Car-Chr11:8836464 | Car09g00219 | Car-Chr9:1082662 | 3.79E-73 | wgd | |
| Car12g00528 | Car-Chr12:3487122 | Car09g00219 | Car-Chr9:1082662 | 8.72E-105 | wgd | |
| Car16g00312 | Car-Chr16:1905764 | Car09g00219 | Car-Chr9:1082662 | 1.45E-89 | wgd | |
| Car04g00447 | Car-Chr4:2527708 | Car09g00219 | Car-Chr9:1082662 | 1.56E-87 | wgd | |
| Car05g00140 | Car-Chr5:702502 | Car09g00219 | Car-Chr9:1082662 | 3.14E-113 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g00219 | K14505 | - | csv:101218302 | 548.125 |