Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g00224 ATGGCGGACAAGGAGAATATATTTCGTCTCACTCGGGCTTCTAAGAAGAGGTTGGCCGAGGCTGCTACCCCCGACGACCGCTCCTCCAACAAGAGGCGGGTCGTTCTTGGGGAGCTTCCTATTTTGCAGAATGCTTCTTCTTCCGTCAACCGGAAGTCCAGGTCTAGAGCTAGCAGGCAGAGACGGAGAGTGAAATCAAGGGATATTGCGGGGACAAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAAATCATTCCACTTCCGCAACGTGATGTCACGTTATCAGATGAGGGCAATTCGGAAGACCCCCAAATGTGCAGGGGTTACGCCTCTGATATTTATGACTATCTTCGCGCAACGGAGACTGATCCAAGAAGAAGGCCCCTACCAGATTACATCGGGACGGTGCAAAAAGATATTAGTGCCAATATGAGGGGAATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACACTATACCTCTCTGTTTCATATGTGGACAGATACTTATCTCTAAATGCAATCAGCAGGCAAAAACTTCAGTTGGTGGGAGTTTCTGCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGTCCTCCACATGTTGAAGAATTTGTTTATATCACCGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGATATATTAAAATCACTGGAATTTGAACTTGGAGATCCCACAATAAAGACATTTTTAAGGAGATTCACAATGGTTGCTCAAGAGACTTATGAGTTTAATACATTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTCAAATTTTTACCGTCTCTCGTTGCTGCATCTGTTATATTTCTAGCACGATTTATGATCCAACCTAAGAAGCATCCTTGGATCTCCAGGTTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAAGACTGCATTCTACTCGTACATGATCTATACCTTAGTAGAAGAGGAGGCGCTTTGGCAGCTATAAGGGAGAAATACAAACAACACAAGTTCAAATTTGTGTCTGTCATGCCTTCACCTCCAGAGATTCCTATTCCATATTTTGAAGATGTTAGAATATGA 1143 43.48 MADKENIFRLTRASKKRLAEAATPDDRSSNKRRVVLGELPILQNASSSVNRKSRSRASRQRRRVKSRDIAGTSAAAAAAAAAAEIIPLPQRDVTLSDEGNSEDPQMCRGYASDIYDYLRATETDPRRRPLPDYIGTVQKDISANMRGILVDWLVEVAEEYKLVSDTLYLSVSYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEADILKSLEFELGDPTIKTFLRRFTMVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIQPKKHPWISRLEHFTGYKPADMKDCILLVHDLYLSRRGGALAAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1270216 1272631 - Carg21797-RA Car09g00224 153961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g00224 380 Pfam Cyclin, N-terminal domain 113 241 IPR006671 -
Car09g00224 380 MobiDBLite consensus disorder prediction 14 70 - -
Car09g00224 380 MobiDBLite consensus disorder prediction 14 33 - -
Car09g00224 380 ProSitePatterns Cyclins signature. 146 177 IPR006671 -
Car09g00224 380 Pfam Cyclin, C-terminal domain 244 367 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01408 Car09g00224 CCT
Car09g00224 Car12g00532 CCT
Car09g00224 Car12g00532 ECH
Car01g01408 Car09g00224 ECH
Car05g00137 Car09g00224 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00224 Car-Chr9:1270216 Car15g00608 Car-Chr15:3365078 3.96E-107 dispersed
Car01g01408 Car-Chr1:12228308 Car09g00224 Car-Chr9:1270216 0 wgd
Car11g01125 Car-Chr11:8994451 Car09g00224 Car-Chr9:1270216 1.22E-101 wgd
Car12g00532 Car-Chr12:3524768 Car09g00224 Car-Chr9:1270216 2.11E-136 wgd
Car19g00427 Car-Chr19:6071411 Car09g00224 Car-Chr9:1270216 6.69E-91 wgd
Car05g00137 Car-Chr5:681997 Car09g00224 Car-Chr9:1270216 2.42E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g00224 K06627 - csv:101207493 648.662